RchiOBHm_Chr5g0065231

Thioredoxin-like protein HCF164, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
71092323 .. 71093353
1031 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGAGAGTGGTTCTGAACAAGAAGAGGATTTCACAAGACGTGATTGTACGGTCTGGTTTGAAATGGGTTGGCCAGATTTCTTTAATTTTATAATTCAAGTGGGACAGTATTCCGGTGCTGAAAACAGAAAGGTTTACCAAGTTGTTGATCCAAGAAGTCATGGAAATGTGCTAACTTCCCAAAGAAAGAACAATTAG

Protein Analysis

65

Amino Acids

7.66

Weight (kDa)

4.91

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 71
AfaI GTAC 1 cut(s) 49
AgsI TTSAA 2 cut(s) 62, 98
AjiI CACGTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 113
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 73
BspPI GGATC 1 cut(s) 143
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 52, 108
Bst6I CTCTTC 1 cut(s) 18
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 73
BtrI CACGTC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 161
CviJI RGCY 1 cut(s) 73
CviKI_1 RGCY 1 cut(s) 73
CviQI GTAC 1 cut(s) 48
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 92, 162
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 160
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 164
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 52, 108
HpyCH4IV ACGT 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 40, 87, 127
MaeII ACGT 1 cut(s) 40
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 3 cut(s) 85, 93, 193
MluNI TGGCCA 1 cut(s) 73
MnlI CCTC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 73
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 73
MspI CCGG 1 cut(s) 114
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 164
PsiI TTATAA 1 cut(s) 92
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 1 cut(s) 148
SetI ASST 2 cut(s) 43, 135
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 85, 93, 193
TaaI ACNGT 2 cut(s) 52, 108
TaiI ACGT 1 cut(s) 43
TasI AATT 3 cut(s) 85, 93, 193
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.