RchiOBHm_Chr5g0066581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
72712006 .. 72712424
419 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGCTTGAAACAGAGGAAGCCGGAAGTAATGTACTGCAGAAACGTTTGAATGATCTGGAGCAAAATACTGTACCGTCTTTGAGGAAAGCTCTCAAGGATGTCGCAATGGAGAAAGATGCAGCAGTGGTTGCACGGGAGGATCTCTCTGCCCAGCTGCGTATGCTCAAGAAACGTCTAAAGGATGCAGAAGAAGAACAGTATCGAGTATGCAATTTGTTTCTCTCCCAGTTCCCTTGGAACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.35

Weight (kDa)

5.45

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 43
AclWI GGATC 1 cut(s) 147
AfaI GTAC 2 cut(s) 33, 72
AgsI TTSAA 2 cut(s) 8, 49
AluBI AGCT 3 cut(s) 89, 154, 243
AluI AGCT 3 cut(s) 89, 154, 243
AlwI GGATC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 119, 154
BbvI GCAGC 2 cut(s) 131, 141
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 120, 155
BlsI GCNGC 2 cut(s) 121, 156
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 2 cut(s) 106, 172
BmuI ACTGGG 1 cut(s) 220
BplI GAGNNNNNCTC 4 cut(s) 73, 105, 128, 160
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 77, 149
BsaJI CCNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 103, 187
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 131, 141
BseYI CCCAGC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 21
Bsp143I GATC 2 cut(s) 52, 139
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 52, 139
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 70, 75, 198
BstAPI GCANNNNNTGC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 103, 187
BstKTI GATC 2 cut(s) 55, 142
BstMBI GATC 2 cut(s) 52, 139
BstMWI GCNNNNNNNGC 2 cut(s) 128, 160
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 131, 141
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BtsCI GGATG 2 cut(s) 103, 187
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Csp6I GTAC 2 cut(s) 32, 71
CviJI RGCY 4 cut(s) 20, 89, 154, 243
CviKI_1 RGCY 4 cut(s) 20, 89, 154, 243
CviQI GTAC 2 cut(s) 32, 71
DpnI GATC 2 cut(s) 54, 141
DpnII GATC 2 cut(s) 52, 139
Eco130I CCWWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaiI YATR 2 cut(s) 161, 208
Fnu4HI GCNGC 2 cut(s) 120, 155
FokI GGATG 2 cut(s) 110, 194
Fsp4HI GCNGC 2 cut(s) 120, 155
GluI GCNGC 2 cut(s) 120, 155
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 1 cut(s) 21
HpaII CCGG 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 56, 166
HpyCH4III ACNGT 3 cut(s) 70, 75, 198
HpyCH4IV ACGT 2 cut(s) 43, 172
HpyCH4V TGCA 5 cut(s) 37, 119, 131, 185, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 160
HpySE526I ACGT 2 cut(s) 43, 172
Kzo9I GATC 2 cut(s) 52, 139
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 4 cut(s) 34, 41, 164, 239
Lsp1109I GCAGC 2 cut(s) 131, 141
LweI GCATC 2 cut(s) 106, 172
MaeII ACGT 2 cut(s) 43, 172
MalI GATC 2 cut(s) 54, 141
MboI GATC 2 cut(s) 52, 139
MboII GAAGA 2 cut(s) 200, 203
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 211
MnlI CCTC 3 cut(s) 7, 75, 130
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 128, 160
NdeII GATC 2 cut(s) 52, 139
PkrI GCNGC 2 cut(s) 121, 156
Psp1406I AACGTT 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 150
PstI CTGCAG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 2 cut(s) 33, 72
RsaNI GTAC 2 cut(s) 32, 71
SatI GCNGC 2 cut(s) 120, 155
Sau3AI GATC 2 cut(s) 52, 139
SetI ASST 5 cut(s) 46, 91, 156, 175, 245
SfaNI GCATC 2 cut(s) 106, 172
SfcI CTRYAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 92, 164
SmoI CTYRAG 2 cut(s) 92, 164
Sse9I AATT 1 cut(s) 211
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 70, 75, 198
TaiI ACGT 2 cut(s) 46, 175
TaqI TCGA 1 cut(s) 202
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 31
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 119, 154
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.