RchiOBHm_Chr5g0067201

kDa class I heat shock protein-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
73408668 .. 73408892
225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGGGCTAAAGAAAGAAGAGATCAAGGTTGGGGTCGAAGATGACAGGGTGCTTCATATTAGCAAAGAGAGGAAGATAGAGAAGGAGGACAAAAACGAGACATGGCACCGGGTTGAGCGTAGTAGCGGCAAGTTCTCCAAAAGGTTCAGGCTTCCTGAGAACGCAGAGATAGACAAGATAAAGGCTACTATGGAGAATGGAGGTTCTCAGCGTGACGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.61

Weight (kDa)

9.0

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 2 - 67 4.2e-18 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AciI CCGC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 110
BanI GGYRCC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 92
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 107, 220
BmrFI CCNGG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 147, 221
BshNI GGYRCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 148, 220
BspLI GGNNCC 2 cut(s) 107, 220
BspT107I GGYRCC 1 cut(s) 105
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 156, 207
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 108
CviAII CATG 1 cut(s) 102
CviJI RGCY 3 cut(s) 7, 151, 185
CviKI_1 RGCY 3 cut(s) 7, 151, 185
DdeI CTNAG 2 cut(s) 156, 207
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
FaeI CATG 1 cut(s) 105
FaiI YATR 3 cut(s) 57, 103, 191
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HapII CCGG 1 cut(s) 109
Hin1II CATG 1 cut(s) 105
HpaII CCGG 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 156, 207
Hsp92II CATG 1 cut(s) 105
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 31, 122, 133, 168
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 3 cut(s) 29, 50, 85
MnlI CCTC 3 cut(s) 63, 79, 194
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 110
NciI CCSGG 1 cut(s) 110
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 107, 220
NmuCI GTSAC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 107, 220
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 110
SetI ASST 3 cut(s) 30, 146, 205
SsiI CCGC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 36
TauI GCSGC 1 cut(s) 129
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.