RchiOBHm_Chr5g0067211

kDa class I heat shock protein-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
73408932 .. 73409093
162 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGTTGCTCATCCCCAACTTCCGACAAAGCAATGTCTTTGATCCCTTTTCCCTTGATCTCTTGGACCCTTTCAAGGACTTCCAATTCCCTACTTCATTGCTCTCTACTTTCCTTGAATTTCCTCATGAAAATTCAGCTTTTGTTAACACCAGGATCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.22

Weight (kDa)

4.44

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 35, 161
AcsI RAATTY 2 cut(s) 116, 130
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 73, 116
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 2 cut(s) 35, 161
ApoI RAATTY 2 cut(s) 116, 130
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 2 cut(s) 37, 95
BseBI CCWGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 37, 95
BslI CCNNNNNNNGG 1 cut(s) 73
Bsp143I GATC 3 cut(s) 40, 55, 153
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 2 cut(s) 35, 161
BsrDI GCAATG 2 cut(s) 37, 95
BssMI GATC 3 cut(s) 40, 55, 153
Bst2UI CCWGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 3 cut(s) 43, 58, 156
BstMBI GATC 3 cut(s) 40, 55, 153
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 9
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 125
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
DpnI GATC 3 cut(s) 42, 57, 155
DpnII GATC 3 cut(s) 40, 55, 153
Eco47I GGWCC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 128
FaiI YATR 1 cut(s) 126
FatI CATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 160
Hin1II CATG 1 cut(s) 128
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HpaI GTTAAC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 128
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 40, 55, 153
LpnPI CCDG 1 cut(s) 136
MaeI CTAG 1 cut(s) 160
MalI GATC 3 cut(s) 42, 57, 155
MboI GATC 3 cut(s) 40, 55, 153
MluCI AATT 3 cut(s) 83, 116, 130
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 132
MseI TTAA 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 3 cut(s) 40, 55, 153
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 66
PagI TCATGA 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 3 cut(s) 40, 55, 153
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 151
SetI ASST 1 cut(s) 139
SgeI CNNG 5 cut(s) 65, 73, 85, 125, 137
SinI GGWCC 1 cut(s) 64
Sse9I AATT 3 cut(s) 83, 116, 130
SspMI CTAG 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 149
TaqI TCGA 1 cut(s) 156
TasI AATT 3 cut(s) 83, 116, 130
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 84, 141
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 116, 130
XspI CTAG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.