Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

74713218 .. 74713823

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAAACCCTAACCCTCTTCTTCACCTTAGCAGCTGCTACCTCTTTATATTTCTTCTGGTTCTATCTCCTAGCCCGAAAGCTCACCGGCCCAAAAGTCTGGCCTGTCGTCGGAAGCCTTCCCGTACTCTTCACAAACCGCAACCGAATCCACGACTGGATCGCAAGCAACCTCCGCGCCACCGGGGGATCATCCACGTACCAAACATGCACCATCGCGCTTCCTTTCTTGGCACGCAAGCAAGGGCTGTTCACGGTGACATGTCACCCGAAGAACATCGAGCACATTCTAAGGACCCGATTCGACAACTATCCGAAAGGGCCGTCGTGGCAGGCGGCATTTCATGATCTCTTGGGGGAGGGGATATTTAATAGTGATGGGGAGACATGGCTGATACAGAGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTGAGGCAGGCCATGGCGAGGTGGGTGAATAGAACTATTCGGAACCGGCTATGGTGCATTTTGGACAAGGCTGCCAAGGATCATACTGCGGTGGACTTGCAGGACCTGTTGCTCCGATTGACGTTCGACAACATTTGCGGACTCACATTCGGTAAGATGTTAATCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016491 GO:0016705 GO:0016713 GO:0018685 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

201

Amino Acids

23.07

Weight (kDa)

9.85

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	84 - 197	1.6e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	177, 218
AciI	CCGC	6 cut(s)	139, 175, 335, 410, 524, 573
AclWI	GGATC	3 cut(s)	167, 196, 522
AfaI	GTAC	2 cut(s)	126, 200
AfiI	CCNNNNNNNGG	2 cut(s)	110, 453
AflIII	ACRYGT	1 cut(s)	260
AluBI	AGCT	2 cut(s)	35, 82
AluI	AGCT	2 cut(s)	35, 82
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	167, 196, 522
AlwNI	CAGNNNCTG	1 cut(s)	541
AoxI	GGCC	4 cut(s)	88, 101, 320, 444
ApeKI	GCWGC	3 cut(s)	32, 35, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspLEI	GCGC	3 cut(s)	179, 220, 415
AspS9I	GGNCC	4 cut(s)	89, 294, 320, 538
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	5 cut(s)	16, 76, 257, 268, 472
AvaII	GGWCC	2 cut(s)	294, 538
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	22, 44, 493
BccI	CCATC	2 cut(s)	221, 371
BceAI	ACGGC	2 cut(s)	307, 423
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	5 cut(s)	33, 36, 336, 411, 507
BlsI	GCNGC	5 cut(s)	34, 37, 337, 412, 508
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	294, 538
BmgT120I	GGNCC	4 cut(s)	89, 294, 320, 538
BmiI	GGNNCC	2 cut(s)	296, 479
BmrFI	CCNGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	2 cut(s)	28, 437
BpuMI	CCSGG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	596
BsaJI	CCNNGG	3 cut(s)	183, 447, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 453
Bse118I	RCCGGY	2 cut(s)	86, 480
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	183, 447, 510
BseGI	GGATG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	596
BseLI	CCNNNNNNNGG	2 cut(s)	110, 453
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	22, 44, 493
Bsh1236I	CGCG	2 cut(s)	177, 218
BshFI	GGCC	4 cut(s)	90, 103, 322, 446
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	87, 183, 481
BslI	CCNNNNNNNGG	2 cut(s)	110, 453
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	4 cut(s)	90, 103, 322, 446
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	159, 188, 346, 514
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	6 cut(s)	139, 175, 335, 410, 524, 573
BspANI	GGCC	4 cut(s)	90, 103, 322, 446
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	2 cut(s)	177, 218
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	296, 479
BspPI	GGATC	3 cut(s)	167, 196, 522
BsrFI	RCCGGY	2 cut(s)	86, 480
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	2 cut(s)	86, 480
BssECI	CCNNGG	3 cut(s)	183, 447, 510
BssMI	GATC	4 cut(s)	159, 188, 346, 514
BssT1I	CCWWGG	2 cut(s)	447, 510
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	2 cut(s)	23, 134
BstBAI	YACGTR	1 cut(s)	198
BstC8I	GCNNGC	5 cut(s)	166, 235, 239, 333, 444
BstDEI	CTNAG	3 cut(s)	28, 290, 437
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	191
BstFNI	CGCG	2 cut(s)	177, 218
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	3 cut(s)	179, 220, 415
BstKTI	GATC	4 cut(s)	162, 191, 349, 517
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	159, 188, 346, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 328
BstNSI	RCATGY	2 cut(s)	210, 264
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	177, 218
BstV1I	GCAGC	3 cut(s)	22, 44, 493
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	99
BsuRI	GGCC	4 cut(s)	90, 103, 322, 446
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	191
Cac8I	GCNNGC	5 cut(s)	166, 235, 239, 333, 444
CaiI	CAGNNNCTG	1 cut(s)	541
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	3 cut(s)	179, 220, 415
Cfr10I	RCCGGY	2 cut(s)	86, 480
Cfr13I	GGNCC	4 cut(s)	89, 294, 320, 538
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	125, 199
CviAII	CATG	5 cut(s)	207, 261, 344, 387, 448
CviQI	GTAC	2 cut(s)	125, 199
DdeI	CTNAG	3 cut(s)	28, 290, 437
DpnI	GATC	4 cut(s)	161, 190, 348, 516
DpnII	GATC	4 cut(s)	159, 188, 346, 514
Eam1104I	CTCTTC	2 cut(s)	23, 134
EarI	CTCTTC	2 cut(s)	23, 134
Eco130I	CCWWGG	2 cut(s)	447, 510
Eco47I	GGWCC	2 cut(s)	294, 538
EcoO109I	RGGNCCY	2 cut(s)	294, 538
EcoT14I	CCWWGG	2 cut(s)	447, 510
ErhI	CCWWGG	2 cut(s)	447, 510
FaeI	CATG	5 cut(s)	210, 264, 347, 390, 451
FatI	CATG	5 cut(s)	206, 260, 343, 386, 447
Fnu4HI	GCNGC	5 cut(s)	33, 36, 336, 411, 507
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	5 cut(s)	33, 36, 336, 411, 507
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	3 cut(s)	178, 219, 414
GluI	GCNGC	5 cut(s)	33, 36, 336, 411, 507
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	90, 103, 322, 446
HapII	CCGG	3 cut(s)	87, 183, 481
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	3 cut(s)	179, 220, 415
Hin1II	CATG	5 cut(s)	210, 264, 347, 390, 451
Hin6I	GCGC	3 cut(s)	177, 218, 413
HinP1I	GCGC	3 cut(s)	177, 218, 413
HinfI	GANTC	3 cut(s)	147, 300, 576
HpaII	CCGG	3 cut(s)	87, 183, 481
HphI	GGTGA	5 cut(s)	16, 76, 257, 268, 472
Hpy166II	GTNNAC	3 cut(s)	252, 423, 529
Hpy188I	TCNGA	4 cut(s)	113, 315, 477, 551
Hpy188III	TCNNGA	2 cut(s)	344, 424
Hpy8I	GTNNAC	3 cut(s)	252, 423, 529
Hpy99I	CGWCG	3 cut(s)	113, 328, 430
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	197, 557
HpyCH4V	TGCA	3 cut(s)	210, 492, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 328
HpyF3I	CTNAG	3 cut(s)	28, 290, 437
HpySE526I	ACGT	2 cut(s)	197, 557
Hsp92II	CATG	5 cut(s)	210, 264, 347, 390, 451
HspAI	GCGC	3 cut(s)	177, 218, 413
Kzo9I	GATC	4 cut(s)	159, 188, 346, 514
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	3 cut(s)	22, 44, 493
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	2 cut(s)	197, 557
MaeIII	GTNAC	2 cut(s)	256, 263
MalI	GATC	4 cut(s)	161, 190, 348, 516
MboI	GATC	4 cut(s)	159, 188, 346, 514
MboII	GAAGA	6 cut(s)	10, 13, 46, 121, 283, 415
MhlI	GDGCHC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	8 cut(s)	26, 52, 182, 352, 393, 423, 432, 447
MseI	TTAA	2 cut(s)	369, 596
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	3 cut(s)	87, 183, 481
MspR9I	CCNGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	177, 218
MwoI	GCNNNNNNNGC	2 cut(s)	174, 328
NciI	CCSGG	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	4 cut(s)	159, 188, 346, 514
NlaIII	CATG	5 cut(s)	210, 264, 347, 390, 451
NlaIV	GGNNCC	2 cut(s)	296, 479
NmuCI	GTSAC	2 cut(s)	256, 263
NspI	RCATGY	2 cut(s)	210, 264
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	147, 300
PkrI	GCNGC	5 cut(s)	34, 37, 337, 412, 508
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
Ppu21I	YACGTR	1 cut(s)	198
PpuMI	RGGWCCY	2 cut(s)	294, 538
PscI	ACATGT	1 cut(s)	260
Psp5II	RGGWCCY	2 cut(s)	294, 538
PspN4I	GGNNCC	2 cut(s)	296, 479
PspPI	GGNCC	4 cut(s)	89, 294, 320, 538
PspPPI	RGGWCCY	2 cut(s)	294, 538
PstNI	CAGNNNCTG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	126, 200
RsaNI	GTAC	2 cut(s)	125, 199
SaqAI	TTAA	2 cut(s)	369, 596
SatI	GCNGC	5 cut(s)	33, 36, 336, 411, 507
Sau3AI	GATC	4 cut(s)	159, 188, 346, 514
Sau96I	GGNCC	4 cut(s)	89, 294, 320, 538
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	29, 37, 44, 84, 174, 200, 458, 543, 560
SinI	GGWCC	2 cut(s)	294, 538
SsiI	CCGC	6 cut(s)	139, 175, 335, 410, 524, 573
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	447, 510
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	200, 560
TaqI	TCGA	3 cut(s)	279, 303, 561
TauI	GCSGC	2 cut(s)	338, 413
TfiI	GAWTC	2 cut(s)	147, 300
Tru1I	TTAA	2 cut(s)	369, 596
Tru9I	TTAA	2 cut(s)	369, 596
TseFI	GTSAC	2 cut(s)	256, 263
TseI	GCWGC	3 cut(s)	32, 35, 506
Tsp45I	GTSAC	2 cut(s)	256, 263
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	294, 538
XceI	RCATGY	2 cut(s)	210, 264
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.