Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

76426952 .. 76430268

Gene Structure 3317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCTCGACAAGGTTGTCCTCCGTGATCCGCGCAGCAGTCTCGCGGAGACGCCATCGTATTCTCTTCCACTTTGAGATCTGTTTAGCTCAGGTTCTTGATTATGAAATCGTGAGGAATTTGATGTATAGAAATGCTGTGTGGAACAGCTGGCACTGCTGTGTCAGCAAATCAGTAGTGGAGGAGGAATTACTATTTGTCAGCAATAAGAAGTTGATGTTACTAGTGAATGTCATGGCATGGATGGGTGGAGATTTGGGGATACCTGCGTTCCCTGAAGAAGACTGCATTCTTCAAGAGTTGATACCTCAGGATTATCTCAGCTTTGTCGTGGGATCAGTTGATGAGCTTGGTGATTTTACAGCGGAGCTTAAAATGTCCTTGTTCCAGTTTGGAATCAGTCCTCAAATTATAGCATCGATTATCCTGCAGGTACTCTGTTATGCCGTCCCCTCCCTAGTAAAGCTGTGGAAAGAAGGCTTAGATGGTCAAGAGAAGATTAAGAGTTATGTATGGTGGATGTCTCTTGGCTTTGCAATTGTAGAGGCTGTGATGCTTGGTCAAGCATGTGATGCTGACAAGTATGTTATTGGTCTGTGCAATATGGTCTTACTCATATTCCCCCGGAAATTTCTGTACTTGCCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008104 GO:0008150 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051641 GO:0061024 GO:0070727 GO:0071840 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecY

Protein Analysis

216

Amino Acids

24.58

Weight (kDa)

5.65

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	127 - 191	4.2e-14	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
Acc36I	ACCTGC	2 cut(s)	274, 421
AccII	CGCG	2 cut(s)	33, 46
AciI	CCGC	3 cut(s)	31, 46, 365
AclWI	GGATC	2 cut(s)	22, 343
AcsI	RAATTY	2 cut(s)	118, 629
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	2 cut(s)	435, 638
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	6 cut(s)	89, 150, 324, 349, 370, 466
AluI	AGCT	6 cut(s)	89, 150, 324, 349, 370, 466
Alw26I	GTCTC	3 cut(s)	43, 46, 528
AlwI	GGATC	2 cut(s)	22, 343
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	118, 629
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	309
BaeI	ACNNNNGTAYC	2 cut(s)	254, 287
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	3 cut(s)	63, 238, 479
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	4 cut(s)	24, 58, 409, 443
BciVI	GTATCC	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	3 cut(s)	43, 46, 528
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	224, 458
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	2 cut(s)	274, 421
BfuI	GTATCC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	3 cut(s)	425, 543, 562
BpiI	GAAGAC	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	625
Bsa29I	ATCGAT	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	2 cut(s)	249, 525
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	104, 323, 334
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	33, 46
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	3 cut(s)	43, 46, 528
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	27, 78, 335
BspACI	CCGC	3 cut(s)	31, 46, 365
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	103, 322, 333
BspDI	ATCGAT	1 cut(s)	419
BspFNI	CGCG	2 cut(s)	33, 46
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	2 cut(s)	274, 421
BspPI	GGATC	2 cut(s)	22, 343
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	3 cut(s)	27, 78, 335
BssNI	GRCGYC	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	4 cut(s)	90, 309, 320, 481
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	249, 525
BstFNI	CGCG	2 cut(s)	33, 46
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	30, 81, 338
BstMAI	GTCTC	3 cut(s)	43, 46, 528
BstMBI	GATC	3 cut(s)	27, 78, 335
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 165, 572
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	2 cut(s)	33, 46
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	419
Bsu36I	CCTNAGG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	249, 525
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	2 cut(s)	274, 421
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	419
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	434, 637
CviAII	CATG	3 cut(s)	235, 240, 567
CviQI	GTAC	2 cut(s)	434, 637
DdeI	CTNAG	4 cut(s)	90, 309, 320, 481
DpnI	GATC	3 cut(s)	29, 80, 337
DpnII	GATC	3 cut(s)	27, 78, 335
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	3 cut(s)	238, 243, 570
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	3 cut(s)	234, 239, 566
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	2 cut(s)	256, 532
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	224, 458
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	625
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	238, 243, 570
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	6 cut(s)	98, 112, 296, 311, 491, 648
HpyAV	CCTTC	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	288, 430, 536, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 165, 572
HpyF3I	CTNAG	4 cut(s)	90, 309, 320, 481
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	238, 243, 570
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	27, 78, 335
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	9 cut(s)	77, 136, 279, 288, 296, 401, 416, 440, 638
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	3 cut(s)	425, 543, 562
MaeI	CTAG	2 cut(s)	224, 458
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	3 cut(s)	29, 80, 337
MboI	GATC	3 cut(s)	27, 78, 335
MboII	GAAGA	5 cut(s)	58, 284, 290, 293, 508
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	5 cut(s)	118, 188, 408, 537, 629
MnlI	CCTC	9 cut(s)	16, 31, 108, 175, 178, 318, 414, 463, 538
MseI	TTAA	2 cut(s)	372, 501
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	150, 365
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	288
MvnI	CGCG	2 cut(s)	33, 46
MwoI	GCNNNNNNNGC	3 cut(s)	156, 165, 572
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	3 cut(s)	27, 78, 335
NlaIII	CATG	3 cut(s)	238, 243, 570
NspI	RCATGY	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	150
RsaI	GTAC	2 cut(s)	435, 638
RsaNI	GTAC	2 cut(s)	434, 637
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	372, 501
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	27, 78, 335
SbfI	CCTGCAGG	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	625
SdaI	CCTGCAGG	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	425, 543, 562
SfcI	CTRYAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	223
Sse8387I	CCTGCAGG	1 cut(s)	432
Sse9I	AATT	5 cut(s)	118, 188, 408, 537, 629
SsiI	CCGC	3 cut(s)	31, 46, 365
SspMI	CTAG	2 cut(s)	224, 458
StyD4I	CCNGG	1 cut(s)	623
TaqI	TCGA	2 cut(s)	8, 419
TasI	AATT	5 cut(s)	118, 188, 408, 537, 629
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	372, 501
Tru9I	TTAA	2 cut(s)	372, 501
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	10
XapI	RAATTY	2 cut(s)	118, 629
XceI	RCATGY	1 cut(s)	570
XspI	CTAG	2 cut(s)	224, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.