RchiOBHm_Chr5g0072221

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
78194389 .. 78194730
342 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGACGAATGCAGGCAAAAGCAATCTGCTGCTGCTGTTATGCACTTGTCTTTTTTCAGGGTTTGAAGTAATTGCACCATCCTATGACTACACAGCCAGCATTGAGTGTTTGGAAAACCCTCACAAACCCCAATATGGTGGAGGAATCATTGTAAACCCTGAACTAAATCACGGCTTGAGAGGGTGGTCTACTTTCGGCTATGCAAAACTCCAACATAGAGATTCACAAGCAGGCAACAAATTTGCTGTGGCTCGTAATAGAAACCAACCACATGCTGGTATTTCACAAAAGACTTATTTGCAAAGAACAAGCTTTACACATTCTCCGCTTGGATACAAGTGA

Protein Analysis

113

Amino Acids

12.52

Weight (kDa)

9.3

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccI GTMKAC 1 cut(s) 188
AciI CCGC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 134, 275
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 28, 31
ApoI RAATTY 1 cut(s) 239
BbvI GCAGC 2 cut(s) 15, 18
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 187
BciVI GTATCC 1 cut(s) 326
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 2 cut(s) 29, 32
BlsI GCNGC 2 cut(s) 30, 33
BpuEI CTTGAG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 275
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 134, 275
BseXI GCAGC 2 cut(s) 15, 18
BslI CCNNNNNNNGG 2 cut(s) 134, 275
BsmI GAATGC 1 cut(s) 13
BspACI CCGC 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 13, 97, 232
BstF5I GGATG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 15, 18
BstXI CCANNNNNNTGG 1 cut(s) 137
BsuI GTATCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 13, 97, 232
CviAII CATG 1 cut(s) 272
CviJI RGCY 5 cut(s) 95, 174, 198, 251, 312
CviKI_1 RGCY 5 cut(s) 95, 174, 198, 251, 312
FaeI CATG 1 cut(s) 275
FaiI YATR 6 cut(s) 40, 84, 135, 201, 216, 273
FatI CATG 1 cut(s) 271
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 29, 32
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 29, 32
GluI GCNGC 2 cut(s) 29, 32
Hin1II CATG 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 2 cut(s) 144, 221
Hpy166II GTNNAC 2 cut(s) 154, 189
Hpy8I GTNNAC 2 cut(s) 154, 189
HpyCH4V TGCA 5 cut(s) 11, 42, 74, 203, 301
Hsp92II CATG 1 cut(s) 275
LpnPI CCDG 5 cut(s) 42, 109, 171, 216, 261
Lsp1109I GCAGC 2 cut(s) 15, 18
MluCI AATT 2 cut(s) 69, 239
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 129, 134, 173
Mva1269I GAATGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 275
NspI RCATGY 1 cut(s) 275
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 144, 221
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 30, 33
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
SatI GCNGC 2 cut(s) 29, 32
SetI ASST 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 2 cut(s) 69, 239
SsiI CCGC 1 cut(s) 326
TasI AATT 2 cut(s) 69, 239
TfiI GAWTC 2 cut(s) 144, 221
TseI GCWGC 2 cut(s) 28, 31
Van91I CCANNNNNTGG 1 cut(s) 275
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.