RchiOBHm_Chr5g0072321

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
78262315 .. 78263064
750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGGGAGCTCTCTACTATGGTTGTGATGGATCAATTCTACTTGAAGACGCCGCCAACTTCACGGGGGAGAAGACAGCTCTCCCAAATGCCAATTCAGTCAGGGGATTCAAAGTGATCGATGATATTAAAAAAGCGGTCAACAAAGCTTGCAAGGGAAATGTGGTCTCATGTGCCGATATATTAGTTGTTGCAGCTCGTGATTCTGTAAACATTGCCCCTCAATACAAAGTACTATTAGGTAAAAGGGATGCAAGAAATGCGAGCTTAAATGATGCCAACAGAAACCTTCCTCCCATTTTTCAACTTCGTGCAGCTTCTCTCGAGCTTCCAATCTCATGGCCTTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

116

Amino Acids

12.47

Weight (kDa)

8.84

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 99 2.6e-26 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 134
AclWI GGATC 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 3 cut(s) 44, 109, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 7 cut(s) 8, 77, 146, 194, 264, 314, 325
AluI AGCT 7 cut(s) 8, 77, 146, 194, 264, 314, 325
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 191, 311
AvaI CYCGRG 1 cut(s) 320
BanII GRGCYC 1 cut(s) 10
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 51, 77
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 203, 323
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 169
BisI GCNGC 3 cut(s) 51, 192, 312
BlsI GCNGC 3 cut(s) 52, 193, 313
BmcAI AGTACT 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 320
BmsI GCATC 2 cut(s) 238, 262
BpiI GAAGAC 2 cut(s) 51, 77
Bsa29I ATCGAT 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 117
BseGI GGATG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 203, 323
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 29, 114
BspACI CCGC 2 cut(s) 51, 134
BspANI GGCC 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 117
BspPI GGATC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 210
BssMI GATC 2 cut(s) 29, 114
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 148, 262
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 32, 117
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 29, 114
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 203, 323
BstV2I GAAGAC 2 cut(s) 51, 77
BstXI CCANNNNNNTGG 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 340
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 148, 262
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 230
CviAII CATG 2 cut(s) 168, 336
CviJI RGCY 8 cut(s) 8, 77, 146, 194, 264, 314, 325, 340
CviKI_1 RGCY 8 cut(s) 8, 77, 146, 194, 264, 314, 325, 340
CviQI GTAC 1 cut(s) 230
DpnI GATC 2 cut(s) 31, 116
DpnII GATC 2 cut(s) 29, 114
Ecl136II GAGCTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 10
FaeI CATG 2 cut(s) 171, 339
FaiI YATR 4 cut(s) 18, 169, 179, 337
FatI CATG 2 cut(s) 167, 335
Fnu4HI GCNGC 3 cut(s) 51, 192, 312
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 3 cut(s) 51, 192, 312
GluI GCNGC 3 cut(s) 51, 192, 312
HaeIII GGCC 1 cut(s) 340
HgaI GACGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 171, 339
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 2 cut(s) 105, 200
Hpy166II GTNNAC 2 cut(s) 139, 208
Hpy188III TCNNGA 2 cut(s) 197, 320
Hpy8I GTNNAC 2 cut(s) 139, 208
HpyAV CCTTC 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 150, 191, 251, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 171, 339
Kzo9I GATC 2 cut(s) 29, 114
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 203, 323
LweI GCATC 2 cut(s) 238, 262
MalI GATC 2 cut(s) 31, 116
MboI GATC 2 cut(s) 29, 114
MboII GAAGA 2 cut(s) 56, 82
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 33, 91
MnlI CCTC 2 cut(s) 228, 300
MseI TTAA 3 cut(s) 126, 266, 349
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 29, 114
NlaIII CATG 2 cut(s) 171, 339
PaeR7I CTCGAG 1 cut(s) 320
PfeI GAWTC 2 cut(s) 105, 200
PkrI GCNGC 3 cut(s) 52, 193, 313
Psp124BI GAGCTC 1 cut(s) 10
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 126, 266, 349
SatI GCNGC 3 cut(s) 51, 192, 312
Sau3AI GATC 2 cut(s) 29, 114
ScaI AGTACT 1 cut(s) 231
SduI GDGCHC 1 cut(s) 10
SetI ASST 9 cut(s) 10, 79, 148, 196, 241, 266, 288, 316, 327
SfaNI GCATC 2 cut(s) 238, 262
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 33, 91
SsiI CCGC 2 cut(s) 51, 134
SstI GAGCTC 1 cut(s) 10
TaqI TCGA 2 cut(s) 117, 321
TasI AATT 2 cut(s) 33, 91
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 105, 200
Tru1I TTAA 3 cut(s) 126, 266, 349
Tru9I TTAA 3 cut(s) 126, 266, 349
TseI GCWGC 2 cut(s) 191, 311
XhoI CTCGAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.