Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030163

Physical Location & Seq

Genomic Coordinates Forward (+)

79486542 .. 79486959

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGATCCGCATGCAGGACTTGAGTGTAGCTTTGATGCTGCTGAGTCCTGGACCAGTTATGGCGTTGCAAGGTGCTCATCGGTCCGAAGGAAATGGCGACGAAGTAGATTGTGTGCCAAGAGTGTACATAAAGACCATGAACGATCGTATTCTAAAGCCAGAGCAACAAGATGCTAAAAATAAGAGGCGACCATGCACCATCCCAAGTCTTTGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009683 GO:0009850 GO:0009987 GO:0010817 GO:0016787 GO:0016788 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033473 GO:0034641 GO:0034754 GO:0042430 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0046483 GO:0048367 GO:0048731 GO:0048856 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

72

Amino Acids

8.04

Weight (kDa)

8.59

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0073491
rosa_samantha	Rh5BG501900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AfaI	GTAC	2 cut(s)	125, 214
AfiI	CCNNNNNNNGG	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	50, 81
AvaII	GGWCC	2 cut(s)	50, 81
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	50, 81
BmgT120I	GGNCC	2 cut(s)	50, 81
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	24, 160
BpuEI	CTTGAG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	3, 142
BspACI	CCGC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	3, 142
Bst2UI	CCWGG	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	6, 145
BstMBI	GATC	2 cut(s)	3, 142
BstMCI	CGRYCG	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	50, 81
CpoI	CGGWCCG	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	124, 213
CspI	CGGWCCG	1 cut(s)	81
CviAII	CATG	3 cut(s)	10, 136, 192
CviJI	RGCY	2 cut(s)	29, 157
CviKI_1	RGCY	2 cut(s)	29, 157
CviQI	GTAC	2 cut(s)	124, 213
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	5, 144
DpnII	GATC	2 cut(s)	3, 142
Eco47I	GGWCC	2 cut(s)	50, 81
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	13, 139, 195
FaiI	YATR	5 cut(s)	11, 59, 128, 137, 193
FatI	CATG	3 cut(s)	9, 135, 191
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	13, 139, 195
HinfI	GANTC	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	13, 67, 195
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	13, 139, 195
Kzo9I	GATC	2 cut(s)	3, 142
LpnPI	CCDG	4 cut(s)	33, 60, 66, 171
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	24, 160
MalI	GATC	2 cut(s)	5, 144
MboI	GATC	2 cut(s)	3, 142
MhlI	GDGCHC	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	3, 142
NlaIII	CATG	3 cut(s)	13, 139, 195
NspI	RCATGY	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	39
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	50, 81
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	125, 214
RsaNI	GTAC	2 cut(s)	124, 213
Rsr2I	CGGWCCG	1 cut(s)	81
RsrII	CGGWCCG	1 cut(s)	81
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	3, 142
Sau96I	GGNCC	2 cut(s)	50, 81
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	2 cut(s)	31, 73
SfaNI	GCATC	2 cut(s)	24, 160
SinI	GGWCC	2 cut(s)	50, 81
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SphI	GCATGC	1 cut(s)	13
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	46
TaqII	GACCGA	1 cut(s)	69
TatI	WGTACW	2 cut(s)	123, 212
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	50, 81
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.