Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80847804 .. 80849216

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGTTTTAGCTTATCTGTCTTGGCTAAATTCTTCAAATTTGGTCTTCAACCAAATGTTATTACCTTCTCCACTCTGATCAACGGCTTTGTTCTCCACAATCAAGTGCCTCAGGCTGCACGAATTTTCACCAAAATGCTGCAGGCAGGTGCAGGTCATTCTAAGCCCACTGTGTTTACTTTCAGCACACTAATTAAGGGCTTTTGCAAGATGGGAAACAACAGTGCGGCTATTCAATTACTGAGGAAGATGGAAGAAAGAGGATGCGAGCCTAACATAGTTTCCTATAACACCATCATTGACAGCCTTTTCAAGGATAGGCAAATTGATGAAGCATTCAACCTCTTCTCAGAAATGATTACTCGAGGTATTGCTCCAACCGCTGTTACTTACAACTCTTTGATTCAAGGAGTTTGCAATATAGGCCAGTGGAAACAAGCTACGAGGTTGTTGAATGAAATGGTGAGTAAAGGCATCTTTCCAGATGTCGGCACCTTCAATATCTTGGTTCATACATTCTGTAAGGAAGGGATGGTCGTGGAAGCCAAAAGTGTGGTTCAAACGATGATTCAAAGACATATTGAACCTACTGTGGTTACATACAACTCACTTATGGATGGTTACTGTTGGCGAGGAGAAATGGACGAGGCAAAAGAAGTTTTTGATCTTATGATAAGCAAGGCCTCCATGGTTGATGTTTGGAGTTGTAACATATTGATTAACGGATATTGCAAGGGTAAAAAGATCGATAAGGCTTACAAGATTTTCAAGGAAATGCATCGTATGGAACTTGTCCCTGATTCCATTACTTATACCACTCTTATCGATGGTTTTTGTAAAACAGGGAGAATACAAGAAGCAGAAAAGCTGTTCTCTCAGATGCAAGGTTGTTGCGAGCTTCCAAATGTTCAAACTTATGCTGTTTTACTTGATGGCCTGTGTAACAACCAGCAACTTTCTACGGCAATAGAATTGCTTAGAGAGATGGAAGCCAACAAAGTAGAACTTAATATTCTAGTTTACACTGTTGTTATTGAAGGTTTGTGCAAAGCTGGAAAAATTGAATCCGCAAGAGATCTCTTCTGTGGTTTGTCATCAAAAGGAGTTCAGCCTGATGTGAGAACATACACTATAATGATTCATGGACTTTGTCATCATGGCTTAATATTTGAAGCAGAAAAGTTGCTGAGAGAAATGGGAGGGAAAGGATGTTCTCCATATGGTTGCACCTATAACACCATTATCCGAGGTTTTATCAATAACAATGAGACATCATGGGCTACGAAAATTTTTCAAGAAATGCTTGAGAGAGGTTTCTCTGCAGATGCATCAACTATGGAATTGATTGTTGAGTTATTGTCGAAAGATACAGTAGATCCTGGTTTATTGGCATTGCTTAAAGATTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

470

Amino Acids

52.51

Weight (kDa)

6.48

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	11 - 69	4.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	15 - 46	2.3e-06	PPR repeat
PPR_2	PF13041	18 - 70	2.9e-11	PPR repeat family
PPR_long	PF17177	34 - 147	7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	55 - 101	2.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	55 - 85	4.2e-11	PPR repeat
PPR_2	PF13041	56 - 96	1.4e-11	PPR repeat family
PPR	PF01535	59 - 89	4.8e-07	PPR repeat
PPR_3	PF13812	80 - 136	1.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	87 - 119	9.1e-12	PPR repeat
PPR_2	PF13041	91 - 140	4.9e-19	PPR repeat family
PPR	PF01535	94 - 124	1.5e-07	PPR repeat
PPR_1	PF12854	122 - 155	4.9e-10	PPR repeat
PPR_2	PF13041	126 - 175	3.9e-17	PPR repeat family
PPR	PF01535	129 - 159	8e-07	PPR repeat
MRP-S27	PF10037	130 - 192	7.5e-07	Mitochondrial 28S ribosomal protein S27
PPR_3	PF13812	149 - 207	2.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	157 - 189	1.3e-09	PPR repeat
PPR_2	PF13041	161 - 209	1.4e-13	PPR repeat family
TPR_24	PF23276	171 - 293	2.1e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	193 - 224	1.7e-11	PPR repeat
PPR_2	PF13041	196 - 245	7.1e-15	PPR repeat family
PPR	PF01535	199 - 227	3.1e-09	PPR repeat
PPR_2	PF13041	232 - 280	4e-18	PPR repeat family
PPR_1	PF12854	233 - 259	2.8e-07	PPR repeat
PPR	PF01535	235 - 262	8.1e-08	PPR repeat
PPR_long	PF17177	248 - 352	2.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	254 - 311	1.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 295	6.9e-14	PPR repeat
PPR_2	PF13041	266 - 315	5.2e-16	PPR repeat family
PPR	PF01535	269 - 296	7.5e-09	PPR repeat
TPR_24	PF23276	269 - 361	3.9e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	301 - 350	1.9e-11	PPR repeat family
PPR_1	PF12854	301 - 330	4e-07	PPR repeat
PPR_2	PF13041	337 - 385	5.8e-16	PPR repeat family
PPR_3	PF13812	364 - 418	6.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 399	6.5e-13	PPR repeat
PPR	PF01535	375 - 404	1.8e-08	PPR repeat
PPR_2	PF13041	409 - 448	3.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	137, 143
AccB1I	GGYRCC	1 cut(s)	491
AciI	CCGC	3 cut(s)	227, 381, 1068
AclWI	GGATC	1 cut(s)	1370
AcsI	RAATTY	4 cut(s)	29, 38, 123, 1287
AfiI	CCNNNNNNNGG	2 cut(s)	313, 488
AjnI	CCWGG	1 cut(s)	1378
AloI	GAACNNNNNNTCC	2 cut(s)	1195, 1227
AluBI	AGCT	5 cut(s)	12, 440, 868, 898, 1052
AluI	AGCT	5 cut(s)	12, 440, 868, 898, 1052
Alw26I	GTCTC	1 cut(s)	1262
AlwI	GGATC	1 cut(s)	1370
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	3 cut(s)	424, 681, 934
ApeKI	GCWGC	2 cut(s)	116, 139
ApoI	RAATTY	4 cut(s)	29, 38, 123, 1287
AsuHPI	GGTGA	2 cut(s)	121, 475
AvaI	CYCGRG	1 cut(s)	363
AxyI	CCTNAGG	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	103, 126
BccI	CCATC	8 cut(s)	205, 244, 302, 526, 611, 821, 926, 979
BceAI	ACGGC	2 cut(s)	100, 978
BciT130I	CCWGG	1 cut(s)	1380
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	1262
BfaI	CTAG	1 cut(s)	1016
BfmI	CTRYAG	2 cut(s)	140, 1320
BfuAI	ACCTGC	2 cut(s)	137, 143
BglII	AGATCT	1 cut(s)	1075
BisI	GCNGC	3 cut(s)	117, 140, 228
BlsI	GCNGC	3 cut(s)	118, 141, 229
Bme1390I	CCNGG	1 cut(s)	1380
BmeT110I	CYCGRG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	1380
BmsI	GCATC	6 cut(s)	254, 483, 787, 870, 1315, 1337
BpiI	GAAGAC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	1325
Bsa29I	ATCGAT	2 cut(s)	747, 825
BsaJI	CCNNGG	2 cut(s)	687, 1246
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 488
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	1391
BseBI	CCWGG	1 cut(s)	1380
BseCI	ATCGAT	2 cut(s)	747, 825
BseDI	CCNNGG	2 cut(s)	687, 1246
BseGI	GGATG	5 cut(s)	269, 537, 622, 1214, 1406
BseLI	CCNNNNNNNGG	2 cut(s)	313, 488
BseMI	GCAATG	1 cut(s)	1391
BseMII	CTCAG	5 cut(s)	125, 233, 363, 890, 1178
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	103, 126
BsgI	GTGCAG	2 cut(s)	102, 171
BshFI	GGCC	3 cut(s)	426, 683, 936
BshNI	GGYRCC	1 cut(s)	491
BshVI	ATCGAT	2 cut(s)	747, 825
BsiHKCI	CYCGRG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	2 cut(s)	313, 488
BsmAI	GTCTC	1 cut(s)	1262
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	426, 683, 936
BsoBI	CYCGRG	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	78, 664, 744, 1075, 1375
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	3 cut(s)	227, 381, 1068
BspANI	GGCC	3 cut(s)	426, 683, 936
BspCNI	CTCAG	5 cut(s)	124, 234, 362, 889, 1179
BspDI	ATCGAT	2 cut(s)	747, 825
BspLI	GGNNCC	1 cut(s)	493
BspMAI	CTGCAG	2 cut(s)	144, 1324
BspMI	ACCTGC	2 cut(s)	137, 143
BspPI	GGATC	1 cut(s)	1370
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	1391
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	687, 1246
BssMI	GATC	5 cut(s)	78, 664, 744, 1075, 1375
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	1380
Bst4CI	ACNGT	6 cut(s)	172, 224, 592, 626, 1027, 1372
Bst6I	CTCTTC	2 cut(s)	350, 1085
BstC8I	GCNNGC	3 cut(s)	144, 269, 896
BstDEI	CTNAG	7 cut(s)	111, 162, 242, 349, 876, 977, 1187
BstDSI	CCRYGG	1 cut(s)	687
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	5 cut(s)	269, 537, 622, 1214, 1406
BstKTI	GATC	5 cut(s)	81, 667, 747, 1078, 1378
BstMAI	GTCTC	1 cut(s)	1262
BstMBI	GATC	5 cut(s)	78, 664, 744, 1075, 1375
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 423
BstNI	CCWGG	1 cut(s)	1380
BstSCI	CCNGG	1 cut(s)	1378
BstSFI	CTRYAG	2 cut(s)	140, 1320
BstV1I	GCAGC	2 cut(s)	103, 126
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	1075, 1375
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	2 cut(s)	1075, 1375
Bsu15I	ATCGAT	2 cut(s)	747, 825
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	426, 683, 936
BsuTUI	ATCGAT	2 cut(s)	747, 825
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	5 cut(s)	269, 537, 622, 1214, 1406
BtsIMutI	CAGTG	4 cut(s)	168, 229, 434, 1023
BveI	ACCTGC	2 cut(s)	137, 143
Cac8I	GCNNGC	3 cut(s)	144, 269, 896
ClaI	ATCGAT	2 cut(s)	747, 825
CviAII	CATG	4 cut(s)	688, 1142, 1157, 1275
DdeI	CTNAG	7 cut(s)	111, 162, 242, 349, 876, 977, 1187
DpnI	GATC	5 cut(s)	80, 666, 746, 1077, 1377
DpnII	GATC	5 cut(s)	78, 664, 744, 1075, 1375
Eam1104I	CTCTTC	2 cut(s)	350, 1085
EarI	CTCTTC	2 cut(s)	350, 1085
Eco130I	CCWWGG	1 cut(s)	687
Eco147I	AGGCCT	1 cut(s)	683
Eco81I	CCTNAGG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	1378
EcoT14I	CCWWGG	1 cut(s)	687
EcoT22I	ATGCAT	2 cut(s)	780, 1330
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	4 cut(s)	691, 1145, 1160, 1278
FalI	AAGNNNNNCTT	4 cut(s)	990, 1022, 1287, 1319
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	4 cut(s)	687, 1141, 1156, 1274
FauNDI	CATATG	1 cut(s)	1219
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	117, 140, 228
FokI	GGATG	5 cut(s)	276, 544, 629, 1221, 1393
Fsp4HI	GCNGC	3 cut(s)	117, 140, 228
FspBI	CTAG	1 cut(s)	1016
GluI	GCNGC	3 cut(s)	117, 140, 228
HaeIII	GGCC	3 cut(s)	426, 683, 936
Hin1II	CATG	4 cut(s)	691, 1145, 1160, 1278
HinfI	GANTC	6 cut(s)	403, 568, 800, 1064, 1138, 1403
HphI	GGTGA	2 cut(s)	121, 475
Hpy166II	GTNNAC	2 cut(s)	177, 1021
Hpy188I	TCNGA	4 cut(s)	78, 352, 879, 1247
Hpy188III	TCNNGA	3 cut(s)	482, 1295, 1410
Hpy8I	GTNNAC	2 cut(s)	177, 1021
HpyAV	CCTTC	4 cut(s)	76, 505, 521, 1031
HpyCH4III	ACNGT	6 cut(s)	172, 224, 592, 626, 1027, 1372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 423
HpyF3I	CTNAG	7 cut(s)	111, 162, 242, 349, 876, 977, 1187
Hsp92II	CATG	4 cut(s)	691, 1145, 1160, 1278
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	5 cut(s)	78, 664, 744, 1075, 1375
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	103, 126
LweI	GCATC	6 cut(s)	254, 483, 787, 870, 1315, 1337
MaeI	CTAG	1 cut(s)	1016
MaeIII	GTNAC	5 cut(s)	385, 595, 620, 707, 941
MalI	GATC	5 cut(s)	80, 666, 746, 1077, 1377
MboI	GATC	5 cut(s)	78, 664, 744, 1075, 1375
MboII	GAAGA	6 cut(s)	25, 38, 259, 266, 337, 1072
MflI	RGATCY	2 cut(s)	1075, 1375
MmeI	TCCRAC	1 cut(s)	401
Mph1103I	ATGCAT	2 cut(s)	780, 1330
MseI	TTAA	5 cut(s)	195, 720, 1008, 1163, 1398
MslI	CAYNNNNRTG	2 cut(s)	134, 1133
MspA1I	CMGCKG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	1380
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	1380
MwoI	GCNNNNNNNGC	2 cut(s)	380, 423
NcoI	CCATGG	1 cut(s)	687
NdeI	CATATG	1 cut(s)	1219
NdeII	GATC	5 cut(s)	78, 664, 744, 1075, 1375
NlaIII	CATG	4 cut(s)	691, 1145, 1160, 1278
NlaIV	GGNNCC	1 cut(s)	493
NsiI	ATGCAT	2 cut(s)	780, 1330
PaeR7I	CTCGAG	1 cut(s)	363
PaqCI	CACCTGC	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	683
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	6 cut(s)	403, 568, 800, 1064, 1138, 1403
PflFI	GACNNNGTC	1 cut(s)	1149
PkrI	GCNGC	3 cut(s)	118, 141, 229
Psp6I	CCWGG	1 cut(s)	1378
PspGI	CCWGG	1 cut(s)	1378
PspN4I	GGNNCC	1 cut(s)	493
PspXI	VCTCGAGB	1 cut(s)	363
PstI	CTGCAG	2 cut(s)	144, 1324
PsuI	RGATCY	2 cut(s)	1075, 1375
PsyI	GACNNNGTC	1 cut(s)	1149
RseI	CAYNNNNRTG	2 cut(s)	134, 1133
SaqAI	TTAA	5 cut(s)	195, 720, 1008, 1163, 1398
SatI	GCNGC	3 cut(s)	117, 140, 228
Sau3AI	GATC	5 cut(s)	78, 664, 744, 1075, 1375
ScrFI	CCNGG	1 cut(s)	1380
SfaNI	GCATC	6 cut(s)	254, 483, 787, 870, 1315, 1337
SfcI	CTRYAG	2 cut(s)	140, 1320
Sfr274I	CTCGAG	1 cut(s)	363
SlaI	CTCGAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	134, 1133
SmlI	CTYRAG	2 cut(s)	363, 1304
SmoI	CTYRAG	2 cut(s)	363, 1304
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	3 cut(s)	227, 381, 1068
SspI	AATATT	2 cut(s)	1012, 1167
SspMI	CTAG	1 cut(s)	1016
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	1378
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	6 cut(s)	172, 224, 592, 626, 1027, 1372
TaqI	TCGA	4 cut(s)	364, 747, 825, 1361
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	6 cut(s)	403, 568, 800, 1064, 1138, 1403
Tru1I	TTAA	5 cut(s)	195, 720, 1008, 1163, 1398
Tru9I	TTAA	5 cut(s)	195, 720, 1008, 1163, 1398
TscAI	CASTG	4 cut(s)	175, 229, 434, 1030
TseI	GCWGC	2 cut(s)	116, 139
TspDTI	ATGAA	5 cut(s)	345, 471, 500, 1130, 1395
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	4 cut(s)	175, 229, 434, 1030
Tth111I	GACNNNGTC	1 cut(s)	1149
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	4 cut(s)	29, 38, 123, 1287
XhoI	CTCGAG	1 cut(s)	363
XspI	CTAG	1 cut(s)	1016
Zsp2I	ATGCAT	2 cut(s)	780, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.