Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

81115787 .. 81117920

Gene Structure 2134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACGATTGGGTGGAGCCTTCCCACGAAAGCAAGGGATCAAATTACTTTCCAGGAGATGAGATGACTCGAATTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCGTGATACCACTGATGATAAAGTTACCGTTGAAAGTGCAGAGGCCACTCTTAAGAGGATTAGAATGGGGCTGCTCCAGCTAGAAGTGTTATGGTGTGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

5.86

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	1 - 30	2.4e-07	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	91, 294
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	3 cut(s)	47, 145, 280
AluI	AGCT	3 cut(s)	47, 145, 280
AlwI	GGATC	2 cut(s)	91, 294
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	1 cut(s)	281
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	63, 301
BmrFI	CCNGG	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	83, 299
BspANI	GGCC	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	63, 301
BspPI	GGATC	2 cut(s)	91, 294
BspTI	CTTAAG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	83, 299
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	7, 203, 229
BstAFI	CTTAAG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	86, 302
BstMBI	GATC	2 cut(s)	83, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	47, 64, 145, 245, 271, 280
CviKI_1	RGCY	6 cut(s)	47, 64, 145, 245, 271, 280
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	2 cut(s)	85, 301
DpnII	GATC	2 cut(s)	83, 299
Eco130I	CCWWGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	41
FaiI	YATR	3 cut(s)	27, 39, 292
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	112
HphI	GGTGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	3 cut(s)	7, 203, 229
HpyCH4V	TGCA	2 cut(s)	37, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	83, 299
LmnI	GCTCC	2 cut(s)	61, 279
LpnPI	CCDG	4 cut(s)	84, 109, 111, 290
Lsp1109I	GCAGC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	85, 301
MboI	GATC	2 cut(s)	83, 299
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	2 cut(s)	88, 117
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	207, 235, 249
MseI	TTAA	2 cut(s)	174, 252
MspCI	CTTAAG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	2 cut(s)	83, 299
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	2 cut(s)	63, 301
NspI	RCATGY	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	63, 301
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	174, 252
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	83, 299
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	4 cut(s)	49, 147, 189, 282
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	88, 117
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	7, 203, 229
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	88, 117
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	174, 252
Tru9I	TTAA	2 cut(s)	174, 252
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	271
TspRI	CASTG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.