Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

81121780 .. 81122743

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGCTAACTTTAAGCCAAGGAGGGATTCTCGAGAAGAACGACTCTCCGTTTGAAGCCTTCAGCTTTGTTTCTTTTCTCTCAAGATCTGACCCGTTGCCATCTCCAGGCCTCGATCAAAAGTTAGTCGACGTTAGAAGTTGCTTGGATGTTGGTCAAATAAAAAACCCAAGCTTGAGCCCTTTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTCCAACCCTAAAATTCCATTCTCAGATGCCATGTTCTCTCTCTGGCAGTCTAGTTCCTATCGAATCTATGCCTTATCTTCTCCAAGGCTCCACCAAGCATTTTAGTGAATATAGAGAAATTATTTATTTGTGCAGGGTTCGTAGACAAAAGAATGTGGCATCCCTATCAAAATCTTGTGATGGTACTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCTCAGACCAGCTTTACGATACCATTTGCAAGCAGGTTGGTTCTTTTCCTTCTATCCTTTGTCTTGAATTGTATGCCTGGACAGAAAATAGTGCAGCAAATATCACTCATATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

7.6

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	2 cut(s)	129, 376
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	56, 515
AjnI	CCWGG	2 cut(s)	106, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	4 cut(s)	66, 174, 430, 460
AluI	AGCT	4 cut(s)	66, 174, 430, 460
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	436, 542
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspLEI	GCGC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	448, 554
BccI	CCATC	2 cut(s)	109, 407
BciT130I	CCWGG	2 cut(s)	108, 526
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	2 cut(s)	437, 543
BlsI	GCNGC	2 cut(s)	438, 544
Bme1390I	CCNGG	2 cut(s)	108, 526
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	108, 526
BmsI	GCATC	2 cut(s)	249, 401
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	67, 196
BsaJI	CCNNGG	2 cut(s)	19, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	108, 526
BseDI	CCNNGG	2 cut(s)	19, 316
BseGI	GGATG	2 cut(s)	154, 392
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	269, 465
BseXI	GCAGC	2 cut(s)	448, 554
BsgI	GTGCAG	2 cut(s)	385, 561
BshFI	GGCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	86, 115, 186
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	268, 464
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	19, 316
BssMI	GATC	3 cut(s)	86, 115, 186
BssT1I	CCWWGG	2 cut(s)	19, 316
Bst2UI	CCWGG	2 cut(s)	108, 526
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	255, 451
BstF5I	GGATG	2 cut(s)	154, 392
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	89, 118, 189
BstMBI	GATC	3 cut(s)	86, 115, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	108, 526
BstSCI	CCNGG	2 cut(s)	106, 524
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	448, 554
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	154, 392
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	479
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	9 cut(s)	18, 59, 66, 111, 174, 180, 321, 430, 460
CviKI_1	RGCY	9 cut(s)	18, 59, 66, 111, 174, 180, 321, 430, 460
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	255, 451
DpnI	GATC	3 cut(s)	88, 117, 188
DpnII	GATC	3 cut(s)	86, 115, 186
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	19, 316
Eco147I	AGGCCT	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	106, 524
EcoT14I	CCWWGG	2 cut(s)	19, 316
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	19, 316
FaeI	CATG	1 cut(s)	267
FaiI	YATR	5 cut(s)	265, 302, 345, 522, 558
FatI	CATG	1 cut(s)	263
FblI	GTMKAC	2 cut(s)	129, 376
Fnu4HI	GCNGC	2 cut(s)	437, 543
FokI	GGATG	2 cut(s)	161, 379
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	437, 543
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	437, 543
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	3 cut(s)	28, 44, 296
Hpy166II	GTNNAC	2 cut(s)	130, 377
Hpy188I	TCNGA	3 cut(s)	91, 258, 454
Hpy188III	TCNNGA	4 cut(s)	32, 34, 84, 512
Hpy8I	GTNNAC	2 cut(s)	130, 377
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	70, 507
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	366, 436, 477, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	2 cut(s)	255, 451
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	86, 115, 186
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	8 cut(s)	93, 120, 261, 352, 467, 470, 511, 538
Lsp1109I	GCAGC	2 cut(s)	448, 554
LweI	GCATC	2 cut(s)	249, 401
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	132
MalI	GATC	3 cut(s)	88, 117, 188
MboI	GATC	3 cut(s)	86, 115, 186
MboII	GAAGA	3 cut(s)	49, 221, 302
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	245, 351, 515
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	17, 122, 460
MseI	TTAA	2 cut(s)	14, 423
MslI	CAYNNNNRTG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	108, 526
MvaI	CCWGG	2 cut(s)	108, 526
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	3 cut(s)	86, 115, 186
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	32
PceI	AGGCCT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	28, 296
PkrI	GCNGC	2 cut(s)	438, 544
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	106, 524
PspGI	CCWGG	2 cut(s)	106, 524
PspN4I	GGNNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	14, 423
SatI	GCNGC	2 cut(s)	437, 543
Sau3AI	GATC	3 cut(s)	86, 115, 186
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	108, 526
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	6 cut(s)	68, 135, 176, 432, 462, 486
SfaNI	GCATC	2 cut(s)	249, 401
SfcI	CTRYAG	1 cut(s)	434
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	32, 82, 175
SmoI	CTYRAG	3 cut(s)	32, 82, 175
Sse9I	AATT	3 cut(s)	245, 351, 515
SseBI	AGGCCT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	106, 524
StyI	CCWWGG	2 cut(s)	19, 316
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	33, 114, 129, 294
TasI	AATT	3 cut(s)	245, 351, 515
TfiI	GAWTC	2 cut(s)	28, 296
Tru1I	TTAA	2 cut(s)	14, 423
Tru9I	TTAA	2 cut(s)	14, 423
TseI	GCWGC	2 cut(s)	436, 542
TspGWI	ACGGA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	32
XmiI	GTMKAC	2 cut(s)	129, 376
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.