RchiOBHm_Chr5g0076341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
82002423 .. 82002788
366 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGGTATCTATCCCTCGCGGGCAAAGCCTTTGCATGCAGAGCATGGAATAGACTGTGCTTTTGGGTCTCATGATGGAGATGAAGCCTTCCTCTTCTCTGGGAATCTCTGCGCACCGATTAATTACTCACCAGGCACCCTAAAGGGCTTAATCACCAAACCCCTGATGACCATCACTGCCATGTTCCCCTTCTTGAAAAAGAGGGAGTTTAAGAGCAGCATAGACGCCGCGTTTGAGTCAACGAGAAAATATGAAGCGTATCTCTTCAAAGACGACCGGTATGCTCTTATAAACTACGGTTCTGAACTTCTGATAATCCCCGCCTCATCCACGTCAAGCTCATGGCTGACGGCTTCCCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

6.82

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
Acc16I TGCGCA 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 2 cut(s) 19, 230
AciI CCGC 3 cut(s) 19, 228, 321
AcyI GRCGYC 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 196, 268
AjiI CACGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 216
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 215, 247
AseI ATTAAT 1 cut(s) 120
AsiGI ACCGGT 1 cut(s) 276
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 120, 145
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 68, 179
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 2 cut(s) 217, 228
BlsI GCNGC 2 cut(s) 218, 229
Bme1390I CCNGG 2 cut(s) 132, 359
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 132, 359
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 170
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 19, 230
Bsh1285I CGRYCG 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 2 cut(s) 277, 359
BsmAI GTCTC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 72
BspACI CCGC 3 cut(s) 19, 228, 321
BspFNI CGCG 2 cut(s) 19, 230
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 357
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 56, 299
Bst6I CTCTTC 2 cut(s) 98, 269
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 21, 36
BstF5I GGATG 1 cut(s) 326
BstFNI CGCG 2 cut(s) 19, 230
BstHHI GCGC 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 72
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 25, 40
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 130, 357
BstUI CGCG 2 cut(s) 19, 230
BstV1I GCAGC 1 cut(s) 228
BtrI CACGTC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 326
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 21, 36
CciI TCATGA 1 cut(s) 70
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 276
CseI GACGC 1 cut(s) 233
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 5 cut(s) 35, 44, 71, 181, 342
CviJI RGCY 6 cut(s) 28, 86, 147, 339, 346, 353
CviKI_1 RGCY 6 cut(s) 28, 86, 147, 339, 346, 353
Eam1104I CTCTTC 2 cut(s) 98, 269
EarI CTCTTC 2 cut(s) 98, 269
Eco31I GGTCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 5 cut(s) 38, 47, 74, 184, 345
FaiI YATR 9 cut(s) 36, 45, 72, 182, 221, 252, 282, 290, 343
FatI CATG 5 cut(s) 34, 43, 70, 180, 341
FauI CCCGC 2 cut(s) 12, 328
Fnu4HI GCNGC 2 cut(s) 217, 228
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 217, 228
FspI TGCGCA 1 cut(s) 112
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 217, 228
HapII CCGG 2 cut(s) 277, 359
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 5 cut(s) 38, 47, 74, 184, 345
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 2 cut(s) 103, 236
HpaII CCGG 2 cut(s) 277, 359
HphI GGTGA 2 cut(s) 120, 145
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 304, 312
Hpy188III TCNNGA 2 cut(s) 71, 193
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 97, 199
HpyCH4III ACNGT 2 cut(s) 56, 299
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 34, 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 40
HpySE526I ACGT 1 cut(s) 332
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 5 cut(s) 38, 47, 74, 184, 345
HspAI GCGC 1 cut(s) 111
LpnPI CCDG 5 cut(s) 84, 117, 144, 176, 290
Lsp1109I GCAGC 1 cut(s) 228
MaeII ACGT 1 cut(s) 332
MboII GAAGA 2 cut(s) 85, 256
MluCI AATT 1 cut(s) 121
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 4 cut(s) 25, 101, 195, 334
MseI TTAA 3 cut(s) 120, 149, 210
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 2 cut(s) 277, 359
MspR9I CCNGG 2 cut(s) 132, 359
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 19, 230
MwoI GCNNNNNNNGC 2 cut(s) 25, 40
NciI CCSGG 1 cut(s) 359
NlaIII CATG 5 cut(s) 38, 47, 74, 184, 345
NlaIV GGNNCC 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 112
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 2 cut(s) 218, 229
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 3 cut(s) 120, 149, 210
SatI GCNGC 2 cut(s) 217, 228
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 132, 359
SetI ASST 2 cut(s) 335, 341
SmiMI CAYNNNNRTG 1 cut(s) 179
SphI GCATGC 1 cut(s) 38
Sse9I AATT 1 cut(s) 121
SsiI CCGC 3 cut(s) 19, 228, 321
StyD4I CCNGG 2 cut(s) 130, 357
TaaI ACNGT 2 cut(s) 56, 299
TaiI ACGT 1 cut(s) 335
TasI AATT 1 cut(s) 121
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 3 cut(s) 120, 149, 210
Tru9I TTAA 3 cut(s) 120, 149, 210
TscAI CASTG 1 cut(s) 181
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 96, 267
TspRI CASTG 1 cut(s) 181
VspI ATTAAT 1 cut(s) 120
XceI RCATGY 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.