RchiOBHm_Chr5g0079031

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
84799192 .. 84800419
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGATCCGCAGCTCGTTGCCTGGTCAGAGTCGGTTGCTGAGTTGTTTCAATTGGATCCTCAAGAGTGAATTTGAAAGGCCAGATTTCCCCCTTTTATTCTCTGGAGCGTCTCCTTTAGTCGGATCGTCACCCTATGCTCGGTGCTATGGAGGACATCAGTTCGGCATGTGGGCGGGACAGTTGGGAGATGGTCGGGCTATTACACTCGGGGAGGTTCTTAACTTAAATCTGAAAGGTGGGAACTGCAGCTTAAAGGTGCTGGAAAGACCCCTTACAGCCGGTTTGCAGATGGCCTTGCTGTGCTTCGTAGTAGCATTCGGGAATTCCTCTGCAGTGAAGCAATGCATAGTCTTGGAATTCCAACAACTCGTGCTCTATGTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

128

Amino Acids

13.93

Weight (kDa)

8.7

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 23 - 75 4.9e-09 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 173
AclWI GGATC 3 cut(s) 49, 62, 130
AcsI RAATTY 3 cut(s) 68, 322, 356
AfiI CCNNNNNNNGG 2 cut(s) 119, 138
AgsI TTSAA 2 cut(s) 49, 74
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 12, 249
AluI AGCT 2 cut(s) 12, 249
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 3 cut(s) 49, 62, 130
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 77, 291
ApeKI GCWGC 2 cut(s) 9, 246
ApoI RAATTY 3 cut(s) 68, 322, 356
AsuHPI GGTGA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 206
BamHI GGATCC 1 cut(s) 54
BauI CACGAG 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 21, 258
BccI CCATC 2 cut(s) 182, 283
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 2 cut(s) 244, 330
BisI GCNGC 2 cut(s) 10, 247
BlsI GCNGC 2 cut(s) 11, 248
Bme1390I CCNGG 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 138
Bse118I RCCGGY 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 119, 138
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 21, 258
BshFI GGCC 2 cut(s) 79, 293
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 119, 138
BsmAI GTCTC 1 cut(s) 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 2 cut(s) 79, 293
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 3, 54, 122
BspACI CCGC 2 cut(s) 7, 173
BspANI GGCC 2 cut(s) 79, 293
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 2 cut(s) 248, 334
BspPI GGATC 3 cut(s) 49, 62, 130
BsrDI GCAATG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 3 cut(s) 3, 54, 122
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 38
BstKTI GATC 3 cut(s) 6, 57, 125
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 3, 54, 122
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 244, 330
BstV1I GCAGC 2 cut(s) 21, 258
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 2 cut(s) 79, 293
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 278
CseI GACGC 1 cut(s) 96
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 12, 79, 197, 249, 278, 293
CviKI_1 RGCY 6 cut(s) 12, 79, 197, 249, 278, 293
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 5, 56, 124
DpnII GATC 3 cut(s) 3, 54, 122
Eco88I CYCGRG 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 322, 356
EcoRII CCWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 135, 147, 167, 347, 378
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 10, 247
Fsp4HI GCNGC 2 cut(s) 10, 247
GluI GCNGC 2 cut(s) 10, 247
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 79, 293
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 27, 122, 231
Hpy188III TCNNGA 3 cut(s) 61, 102, 319
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 246, 286, 332, 345
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 3 cut(s) 3, 54, 122
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 6, 33, 87, 93, 245, 292
Lsp1109I GCAGC 2 cut(s) 21, 258
MaeIII GTNAC 1 cut(s) 126
MalI GATC 3 cut(s) 5, 56, 124
MboI GATC 3 cut(s) 3, 54, 122
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 4 cut(s) 49, 68, 322, 356
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 100, 385
MnlI CCTC 4 cut(s) 68, 143, 205, 337
Mph1103I ATGCAT 1 cut(s) 347
MseI TTAA 3 cut(s) 219, 224, 251
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 21
NdeII GATC 3 cut(s) 3, 54, 122
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 347
NspI RCATGY 1 cut(s) 169
PctI GAATGC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 11, 248
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 56
PstI CTGCAG 2 cut(s) 248, 334
PsuI RGATCY 1 cut(s) 54
SaqAI TTAA 3 cut(s) 219, 224, 251
SatI GCNGC 2 cut(s) 10, 247
Sau3AI GATC 3 cut(s) 3, 54, 122
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 375
SetI ASST 5 cut(s) 14, 216, 238, 251, 258
SfcI CTRYAG 2 cut(s) 244, 330
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 4 cut(s) 49, 68, 322, 356
SsiI CCGC 2 cut(s) 7, 173
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 180
TasI AATT 4 cut(s) 49, 68, 322, 356
Tru1I TTAA 3 cut(s) 219, 224, 251
Tru9I TTAA 3 cut(s) 219, 224, 251
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 126
TseI GCWGC 2 cut(s) 9, 246
Tsp45I GTSAC 1 cut(s) 126
TspRI CASTG 1 cut(s) 339
XapI RAATTY 3 cut(s) 68, 322, 356
XceI RCATGY 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.