RchiOBHm_Chr5g0079411

Acetolactate synthase, small subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
85104558 .. 85106739
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGTTGCTCTGCAAAGAAATTTAAGCAAGTTTGGGATTAGAGGAATTGCCAGAACCGGAAAGATAGCTTTGAAGAGAGAAAAGTTGGGTGCTTCCGCTCCATTTTGGCGCTTTTGGACACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATCTTGTGGCTTTGAAATACATGGATATACTCTTATCTATGGCAACATTACCACCACAGAATTGGTAACCTTGTCTCGACCACTGTGCTTGCAACAAATGAGTCAAGTAACTGCTTTTGACGAATGCAAACAACTGTACAGATGCTGCAATAACTTGCCAAGGAAACACAATTTCTGGATAAACAAACAGCTTCATTTTTGTACATTGAAGCAGGAGCTCTTGAGGAGAAGTTAA

Protein Analysis

132

Amino Acids

15.42

Weight (kDa)

9.42

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 2 cut(s) 302, 367
AgsI TTSAA 3 cut(s) 73, 179, 373
AluBI AGCT 3 cut(s) 68, 355, 382
AluI AGCT 3 cut(s) 68, 355, 382
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BcoDI GTCTC 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
BmsI GCATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 153, 323
BsaWI WCCGGW 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 153, 323
BseXI GCAGC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 384
Bsp1407I TGTACA 2 cut(s) 300, 365
BspACI CCGC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 98
BsrGI TGTACA 2 cut(s) 300, 365
BssECI CCNNGG 2 cut(s) 153, 323
BssT1I CCWWGG 2 cut(s) 153, 323
Bst4CI ACNGT 2 cut(s) 249, 300
Bst6I CTCTTC 1 cut(s) 68
BstAUI TGTACA 2 cut(s) 300, 365
BstC8I GCNNGC 1 cut(s) 254
BstEII GGTNACC 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 243
BstPI GGTNACC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 254
CaiI CAGNNNCTG 1 cut(s) 309
CfoI GCGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 301, 366
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 1 cut(s) 185
CviJI RGCY 4 cut(s) 68, 174, 355, 382
CviKI_1 RGCY 4 cut(s) 68, 174, 355, 382
CviQI GTAC 2 cut(s) 301, 366
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 153, 323
Eco24I GRGCYC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 153, 323
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 153, 323
FaeI CATG 1 cut(s) 188
FaiI YATR 4 cut(s) 130, 186, 192, 204
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 310
GlaI GCGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 112
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 2 cut(s) 149, 265
HpaII CCGG 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 240, 340, 385
HpyCH4III ACNGT 2 cut(s) 249, 300
HpyCH4V TGCA 5 cut(s) 13, 125, 256, 291, 312
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 103, 379
LpnPI CCDG 4 cut(s) 64, 70, 325, 362
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 229, 271
MbiI CCGCTC 1 cut(s) 98
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 19, 45, 224, 334
MlyI GAGTC 2 cut(s) 143, 274
MnlI CCTC 2 cut(s) 35, 381
MseI TTAA 2 cut(s) 23, 397
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 188
PctI GAATGC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 2 cut(s) 143, 273
PpsI GAGTC 2 cut(s) 143, 273
Psp124BI GAGCTC 1 cut(s) 384
PspEI GGTNACC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 309
RsaI GTAC 2 cut(s) 302, 367
RsaNI GTAC 2 cut(s) 301, 366
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 23, 397
SatI GCNGC 1 cut(s) 310
SchI GAGTC 2 cut(s) 143, 274
SduI GDGCHC 1 cut(s) 384
SetI ASST 4 cut(s) 70, 236, 357, 384
SfaNI GCATC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 4 cut(s) 19, 45, 224, 334
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 384
StyI CCWWGG 2 cut(s) 153, 323
TaaI ACNGT 2 cut(s) 249, 300
TaqI TCGA 1 cut(s) 241
TasI AATT 4 cut(s) 19, 45, 224, 334
TatI WGTACW 2 cut(s) 300, 365
Tru1I TTAA 2 cut(s) 23, 397
Tru9I TTAA 2 cut(s) 23, 397
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 252
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.