RchiOBHm_Chr5g0079951
ERF Family

RING FYVE PHD zinc finger superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
85797976 .. 85799018
1043 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGAATTCACAGTTTGTGTTCTCTGACGAAAAAGTTCTTTTAATGCAGCCTTATCAACCTGGTTATACTGTCCCATCACCTCCCCCTCAGTTTGACGACACTACTATTAGCATCAGGCAAGTTCACAATTTACATAGGCCTTTTAACTCAGTTAATATTGCTACTATGGGATTTTTTTTTTCCTTTTGGTTTTTCAGAATAAAAATTTGGAAAGATGCCAGGATGTATATATATGATAGTGCTCTTTGTATAATACAATCTTCAGCCCAATATGGTGCAGACCTTGTCTGTTTTGTAGCTCTTTTGGAGTGA

Protein Analysis

103

Amino Acids

12.0

Weight (kDa)

6.03

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 4, 204
AcuI CTGAAG 1 cut(s) 246
AjnI CCWGG 2 cut(s) 58, 218
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 244
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 4, 204
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 60, 220
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 60, 220
BmrFI CCNGG 2 cut(s) 60, 220
BmsI GCATC 2 cut(s) 120, 205
BseBI CCWGG 2 cut(s) 60, 220
BseGI GGATG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 101, 162
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 244
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 100, 161
Bst2UI CCWGG 2 cut(s) 60, 220
Bst4CI ACNGT 2 cut(s) 12, 70
BstDEI CTNAG 2 cut(s) 87, 148
BstF5I GGATG 1 cut(s) 228
BstNI CCWGG 2 cut(s) 60, 220
BstSCI CCNGG 2 cut(s) 58, 218
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 228
CsiI ACCWGGT 1 cut(s) 58
CviJI RGCY 4 cut(s) 49, 139, 266, 299
CviKI_1 RGCY 4 cut(s) 49, 139, 266, 299
DdeI CTNAG 2 cut(s) 87, 148
Eco147I AGGCCT 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 58, 218
FaiI YATR 9 cut(s) 66, 135, 167, 228, 230, 232, 234, 251, 273
FaqI GGGAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 139
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 25, 197
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 12, 70
HpyCH4V TGCA 2 cut(s) 46, 278
HpyF3I CTNAG 2 cut(s) 87, 148
LpnPI CCDG 5 cut(s) 45, 72, 100, 205, 232
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 120, 205
MabI ACCWGGT 1 cut(s) 58
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 3 cut(s) 4, 127, 204
MnlI CCTC 2 cut(s) 90, 96
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 3 cut(s) 41, 144, 153
MspR9I CCNGG 2 cut(s) 60, 220
MvaI CCWGG 2 cut(s) 60, 220
PceI AGGCCT 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 58, 218
PspGI CCWGG 2 cut(s) 58, 218
PsyI GACNNNGTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 41, 144, 153
SatI GCNGC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 60, 220
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 61, 82, 285, 301
SexAI ACCWGGT 1 cut(s) 58
SfaNI GCATC 2 cut(s) 120, 205
SgeI CNNG 7 cut(s) 71, 72, 127, 131, 231, 232, 296
Sse9I AATT 3 cut(s) 4, 127, 204
SseBI AGGCCT 1 cut(s) 139
SspI AATATT 1 cut(s) 157
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 58, 218
TaaI ACNGT 2 cut(s) 12, 70
TasI AATT 3 cut(s) 4, 127, 204
Tru1I TTAA 3 cut(s) 41, 144, 153
Tru9I TTAA 3 cut(s) 41, 144, 153
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 284
XapI RAATTY 2 cut(s) 4, 204
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.