Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

87010798 .. 87012670

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGAAACTGTTCCGGGAGAGTTGGCACTCGGTTGAAAACACCTTTGTTTCCTGAAAACATCATACATAGCAGTTGTAAGAAGGTTCCTAATTCCATCAAAGAGATCAGGAAGTTTGCCCAGAAGGCAATGGGAACAAATGATGTCAGGGTGGATATGAAGTTGAACAAGCAATTCTGGGGCAGAGGAATCAGGAGTATTCCAAGAAGAATCAGGGTTCGCATTGCTCGCAAGACGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L31e

Protein Analysis

81

Amino Acids

9.34

Weight (kDa)

11.62

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L31e	PF01198	27 - 81	4.5e-23	Ribosomal protein L31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	37, 166
Asp700I	GAANNNNTTC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	16
BccI	CCATC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	135, 222
BseMI	GCAATG	2 cut(s)	135, 222
BsiSI	CCGG	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	87
BsrDI	GCAATG	2 cut(s)	135, 222
BssMI	GATC	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 228
BstSCI	CCNGG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	229
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
FaiI	YATR	3 cut(s)	65, 69, 158
HapII	CCGG	1 cut(s)	15
HinfI	GANTC	2 cut(s)	189, 210
HpaII	CCGG	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	53, 109, 193
HpyAV	CCTTC	2 cut(s)	76, 118
HpyCH4III	ACNGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 228
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	8 cut(s)	28, 66, 94, 133, 134, 163, 178, 199
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	1 cut(s)	219
MluCI	AATT	2 cut(s)	91, 173
MnlI	CCTC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	10
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	125, 228
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	189, 210
PfoI	TCCNGGA	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	2 cut(s)	46, 87
Sse9I	AATT	2 cut(s)	91, 173
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	2 cut(s)	91, 173
TfiI	GAWTC	2 cut(s)	189, 210
TspDTI	ATGAA	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.