RchiOBHm_Chr5g0081391
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
87381346 .. 87383853
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGCCACCCACCCTCCATCAGTCTCTCGATCCCATCTCTCACTCGATCCCATCTCTCATCTCCCTCTGCTCTCTCCCATCTCCCATCTCCCCTCTCCCCTCTGCTCGATCTCCCTTCTCCCTCTGCTCGAACGCATCCCATCCGATCTCCCTTCTCCCTCCATCCGATCTCTCTCAAATAACCCATCACAGAACGCATCCAATCCCTGCTCGATCTCCCATCGGTCTCCGGTCGATCTCCCTTTGCTCGGTCTCCGGTCGATCTCCCATCTCCATCGGTCGATCTCCCATCTCCATCCGGTCGATCTCCTCTGCTCGGTCTCTGCTCGGTCTCCGGTCGATCTCTGGTCGATCTCCGCTCTCCTCTGGTCGATCTCCCTCTGCTCGGTCTCCGGTCGATCTCCCTCCGCTCGGTCTCCGGTCGGTCTCCCTGCTCGGTCTATCTCCTCTGCTCGGTCTCCCTCTGTTCGATCTCCCTCTCACAGAACCCATCCAATCACAGAACGCATCTCGGCCTCACTTGCATCTGAAATTGAAGCCTCAATCAAGCAATTTTCGAATCAAGCAAGAAAGACTCCTCACAGCTGAAAATCAGAGGCTAAATGAGAAGTGTGAGGCTATGCAACCAAGGCAACCAGTAAGTGAGCAGAGAGAAAACTTAGCCTGCACTGAAAGTAGTCCAAGTTCAGGTGTTGACATTGAATTGTTCGTTGGATTGCCAGAAAGAAGATCGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008134 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015031 GO:0015833 GO:0017038 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034504 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045184 GO:0045893 GO:0045935 GO:0046907 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

246

Amino Acids

26.53

Weight (kDa)

10.68

Isoelectric Point (pI)

97.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 358, 409
AciI CCGC 2 cut(s) 356, 407
AclWI GGATC 2 cut(s) 23, 40
AfiI CCNNNNNNNGG 6 cut(s) 247, 315, 384, 410, 452, 686
AgsI TTSAA 2 cut(s) 535, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 1 cut(s) 584
AluI AGCT 1 cut(s) 584
Alw26I GTCTC 9 cut(s) 27, 230, 256, 324, 335, 393, 419, 430, 461
AlwI GGATC 2 cut(s) 23, 40
AoxI GGCC 1 cut(s) 512
AsuII TTCGAA 1 cut(s) 556
BcoDI GTCTC 9 cut(s) 27, 230, 256, 324, 335, 393, 419, 430, 461
BfaI CTAG 1 cut(s) 739
BmsI GCATC 4 cut(s) 143, 205, 515, 532
Bpu14I TTCGAA 1 cut(s) 556
BsaI GGTCTC 8 cut(s) 230, 256, 324, 335, 393, 419, 430, 461
BsaJI CCNNGG 1 cut(s) 626
BsaWI WCCGGW 6 cut(s) 228, 254, 297, 333, 391, 417
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 315, 384, 410, 452, 686
Bse1I ACTGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 6 cut(s) 134, 139, 161, 196, 294, 489
BseLI CCNNNNNNNGG 6 cut(s) 247, 315, 384, 410, 452, 686
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 4 cut(s) 298, 352, 435, 566
BsgI GTGCAG 1 cut(s) 649
Bsh1285I CGRYCG 7 cut(s) 233, 259, 280, 302, 338, 396, 422
BshFI GGCC 1 cut(s) 514
BsiEI CGRYCG 7 cut(s) 233, 259, 280, 302, 338, 396, 422
BsiSI CCGG 6 cut(s) 229, 255, 298, 334, 392, 418
BslI CCNNNNNNNGG 6 cut(s) 247, 315, 384, 410, 452, 686
BsmAI GTCTC 9 cut(s) 27, 230, 256, 324, 335, 393, 419, 430, 461
BsnI GGCC 1 cut(s) 514
Bso31I GGTCTC 8 cut(s) 230, 256, 324, 335, 393, 419, 430, 461
Bsp119I TTCGAA 1 cut(s) 556
BspACI CCGC 2 cut(s) 356, 407
BspANI GGCC 1 cut(s) 514
BspPI GGATC 2 cut(s) 23, 40
BspT104I TTCGAA 1 cut(s) 556
BspTNI GGTCTC 8 cut(s) 230, 256, 324, 335, 393, 419, 430, 461
BsrBI CCGCTC 2 cut(s) 358, 409
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 658
BstF5I GGATG 6 cut(s) 134, 139, 161, 196, 294, 489
BstMAI GTCTC 9 cut(s) 27, 230, 256, 324, 335, 393, 419, 430, 461
BstMCI CGRYCG 7 cut(s) 233, 259, 280, 302, 338, 396, 422
BstMWI GCNNNNNNNGC 2 cut(s) 520, 628
BsuRI GGCC 1 cut(s) 514
BtsCI GGATG 6 cut(s) 134, 139, 161, 196, 294, 489
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 664
CviJI RGCY 6 cut(s) 514, 538, 584, 598, 617, 662
CviKI_1 RGCY 6 cut(s) 514, 538, 584, 598, 617, 662
DdeI CTNAG 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 626
Eco31I GGTCTC 8 cut(s) 230, 256, 324, 335, 393, 419, 430, 461
EcoT14I CCWWGG 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 626
FaiI YATR 1 cut(s) 620
FokI GGATG 6 cut(s) 121, 126, 148, 183, 281, 476
FspBI CTAG 1 cut(s) 739
HaeIII GGCC 1 cut(s) 514
HapII CCGG 6 cut(s) 229, 255, 298, 334, 392, 418
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 2 cut(s) 558, 573
HpaII CCGG 6 cut(s) 229, 255, 298, 334, 392, 418
Hpy166II GTNNAC 1 cut(s) 694
Hpy188I TCNGA 4 cut(s) 144, 166, 528, 594
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 694
HpyAV CCTTC 2 cut(s) 124, 161
HpyCH4V TGCA 3 cut(s) 523, 622, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 520, 628
HpyF3I CTNAG 1 cut(s) 658
LweI GCATC 4 cut(s) 143, 205, 515, 532
MaeI CTAG 1 cut(s) 739
MbiI CCGCTC 2 cut(s) 358, 409
MboII GAAGA 1 cut(s) 738
MluCI AATT 3 cut(s) 530, 550, 701
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 6 cut(s) 229, 255, 298, 334, 392, 418
MwoI GCNNNNNNNGC 2 cut(s) 520, 628
NmeAIII GCCGAG 1 cut(s) 490
NspV TTCGAA 1 cut(s) 556
PfeI GAWTC 1 cut(s) 558
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PvuII CAGCTG 1 cut(s) 584
SchI GAGTC 1 cut(s) 567
SetI ASST 2 cut(s) 586, 691
SfaNI GCATC 4 cut(s) 143, 205, 515, 532
SfuI TTCGAA 1 cut(s) 556
Sse9I AATT 3 cut(s) 530, 550, 701
SsiI CCGC 2 cut(s) 356, 407
SspMI CTAG 1 cut(s) 739
StyI CCWWGG 1 cut(s) 626
TasI AATT 3 cut(s) 530, 550, 701
TfiI GAWTC 1 cut(s) 558
TscAI CASTG 1 cut(s) 673
TspRI CASTG 1 cut(s) 673
XspI CTAG 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.