RchiOBHm_Chr5g0083001

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
88765026 .. 88765268
243 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAATTTCGGTTCCCATATTTGTAAATCCGAGGCCATCGGACGTGATAGGACCTCTGCATGAAGTGCTTGAGAGTAGTGGGGAGAAACCATTGTATAAGCAAGTTCTGTATTCTGACTATGTCAAGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACAGTTGACTTCGCCAAAATCTAA

Protein Analysis

80

Amino Acids

9.03

Weight (kDa)

9.65

Isoelectric Point (pI)

12.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 1 - 30 8e-07 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 195
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 220
AjiI CACGTC 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 195
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AspS9I GGNCC 1 cut(s) 110
AvaII GGWCC 1 cut(s) 110
BccI CCATC 2 cut(s) 103, 203
BfaI CTAG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 13
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 195
BspANI GGCC 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 195
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 94
BtrI CACGTC 1 cut(s) 103
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 119, 206
CviJI RGCY 2 cut(s) 94, 203
CviKI_1 RGCY 2 cut(s) 94, 203
CviQI GTAC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 2 cut(s) 122, 209
FaiI YATR 5 cut(s) 77, 120, 156, 180, 207
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 2 cut(s) 118, 205
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 122, 209
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 90, 100, 175
Hpy188III TCNNGA 2 cut(s) 196, 206
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 122, 209
Kpn2I TCCGGA 1 cut(s) 195
LpnPI CCDG 1 cut(s) 209
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 102
MboII GAAGA 2 cut(s) 184, 226
MluCI AATT 1 cut(s) 63
MnlI CCTC 2 cut(s) 84, 123
MroI TCCGGA 1 cut(s) 195
MspI CCGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 124
NlaIII CATG 2 cut(s) 122, 209
NlaIV GGNNCC 1 cut(s) 72
PagI TCATGA 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 110
PspPPI RGGWCCY 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 110
SetI ASST 2 cut(s) 105, 115
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 27, 34
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 135
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 63
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.