RchiOBHm_Chr5g0083161

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
88857808 .. 88858137
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGCTTCTTATGAAGAAAAACGTGCTGCTTTCAAAGCTGCAGAGCGGCTTCAAGAGAGTCCGCAATCTGAAAATCCTTCTTTTGTCAAATCGATGTTTGGGTCTCATGTCTATAGCTGTTTTTGTTTGGTGAGTTTCAATGAAGTTGCGTTCTGGTTTTTTTTTTTTACACTTATTAATGGTTGGTTTCAATTTGCAATGCCAATATTGATTCATGTTGTGGCAGAACTAGTATCATTGCTTGATCTGCTAATCTACATGTTTACTAATTCTTGTTCTGATTACAAGAGTCTTCCTTCTAAATTCTGTGAGGATCATCTCCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.65

Weight (kDa)

5.5

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 2 cut(s) 46, 62
AclWI GGATC 1 cut(s) 321
AcsI RAATTY 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 4 cut(s) 34, 53, 139, 191
AhlI ACTAGT 1 cut(s) 229
AluBI AGCT 2 cut(s) 38, 117
AluI AGCT 2 cut(s) 38, 117
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 26, 38
ApoI RAATTY 1 cut(s) 302
AseI ATTAAT 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 13, 25
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 39, 112
BisI GCNGC 3 cut(s) 27, 39, 47
BlsI GCNGC 3 cut(s) 28, 40, 48
BpiI GAAGAC 1 cut(s) 284
Bsa29I ATCGAT 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 204, 236
BseCI ATCGAT 1 cut(s) 92
BseMI GCAATG 2 cut(s) 204, 236
BseXI GCAGC 2 cut(s) 13, 25
BshVI ATCGAT 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 244, 313
BspACI CCGC 2 cut(s) 46, 62
BspDI ATCGAT 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 204, 236
BssMI GATC 2 cut(s) 244, 313
BstKTI GATC 2 cut(s) 247, 316
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 244, 313
BstMWI GCNNNNNNNGC 2 cut(s) 35, 247
BstNSI RCATGY 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 39, 112
BstV1I GCAGC 2 cut(s) 13, 25
BstV2I GAAGAC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 92
CviAII CATG 3 cut(s) 107, 215, 259
CviJI RGCY 4 cut(s) 5, 38, 49, 117
CviKI_1 RGCY 4 cut(s) 5, 38, 49, 117
DpnI GATC 2 cut(s) 246, 315
DpnII GATC 2 cut(s) 244, 313
Eco31I GGTCTC 1 cut(s) 108
FaeI CATG 3 cut(s) 110, 218, 262
FaiI YATR 5 cut(s) 12, 108, 114, 216, 260
FatI CATG 3 cut(s) 106, 214, 258
Fnu4HI GCNGC 3 cut(s) 27, 39, 47
Fsp4HI GCNGC 3 cut(s) 27, 39, 47
FspBI CTAG 1 cut(s) 230
GluI GCNGC 3 cut(s) 27, 39, 47
Hin1II CATG 3 cut(s) 110, 218, 262
HinfI GANTC 3 cut(s) 58, 211, 289
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 70, 280
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 87, 306
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 41, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 247
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 3 cut(s) 110, 218, 262
Kzo9I GATC 2 cut(s) 244, 313
LpnPI CCDG 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 13, 25
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 22
MalI GATC 2 cut(s) 246, 315
MbiI CCGCTC 1 cut(s) 46
MboI GATC 2 cut(s) 244, 313
MboII GAAGA 2 cut(s) 26, 284
MluCI AATT 3 cut(s) 191, 268, 302
MlyI GAGTC 2 cut(s) 67, 298
MnlI CCTC 1 cut(s) 304
MseI TTAA 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 35, 247
NdeII GATC 2 cut(s) 244, 313
NlaIII CATG 3 cut(s) 110, 218, 262
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 28, 40, 48
PleI GAGTC 2 cut(s) 66, 297
PpsI GAGTC 2 cut(s) 66, 297
PscI ACATGT 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 177
PstI CTGCAG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 3 cut(s) 27, 39, 47
Sau3AI GATC 2 cut(s) 244, 313
SchI GAGTC 2 cut(s) 67, 298
SetI ASST 3 cut(s) 25, 40, 119
SfcI CTRYAG 2 cut(s) 39, 112
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 3 cut(s) 191, 268, 302
SsiI CCGC 2 cut(s) 46, 62
SspI AATATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 230
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 92
TasI AATT 3 cut(s) 191, 268, 302
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 2 cut(s) 26, 38
TspDTI ATGAA 3 cut(s) 27, 156, 203
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.