Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

88966156 .. 88966578

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

59

Amino Acids

6.38

Weight (kDa)

4.21

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	108, 117
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	14, 74, 131
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	109
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	27, 30
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	19
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	2 cut(s)	108, 117
BspCNI	CTCAG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	92
CviAII	CATG	4 cut(s)	55, 59, 82, 172
CviJI	RGCY	3 cut(s)	111, 142, 147
CviKI_1	RGCY	3 cut(s)	111, 142, 147
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	4 cut(s)	58, 62, 85, 175
FaiI	YATR	5 cut(s)	56, 60, 83, 114, 173
FatI	CATG	4 cut(s)	54, 58, 81, 171
Fnu4HI	GCNGC	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	58, 62, 85, 175
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	3 cut(s)	14, 74, 131
Hpy188I	TCNGA	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	58, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	58, 62, 85, 175
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	11, 38
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	5, 8, 58, 91, 95, 158
Mph1103I	ATGCAT	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	4 cut(s)	58, 62, 85, 175
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	106, 144
SfaNI	GCATC	1 cut(s)	154
SgeI	CNNG	9 cut(s)	23, 37, 38, 67, 71, 94, 109, 138, 149
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	108, 117
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	24
TauI	GCSGC	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.