RchiOBHm_Chr4g0385151

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
635700 .. 638694
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
ATGGGGCAGCAATCTCTGATCTATAGCTTCGTGGCTCGAGGCACTGTGATTCTTGCCGAGTACACAGAGTTCACCGGAAATTTCACCAGCATCGCCTCTCAATGCCTCCAGAAGCTTCCTGCCTCCAACAACAAGTTCACCTACAATTGCGATGGCCACACCTTCAATTACCTCGTCGAAAACGGCTTCAGTGAGTCCCCCCCCCCTCCACCATTTTCTTTCTTTTTACCTTTCTTCTCTTCCAATTTATCCATTTCTCTTCGATTACGAATTCATCCTTCTGATCTGCGTCGATTTGATCCTTTCTCGAACTTGATCCACGCGTTGTTTATATGTATTCATGATTCTATTACGGTGATTCTGTTGCTTTTGTGTGTGTGTGTGTGTGTGGTAGAACCAGATTGTTGTATTGGATCATATCATTTTGTGATTTTAAGATGCTTTGGTGATCCGAAGCTGTCATGCTATAGAAAGAAGAAGGGGAACTGCGCGAGAAAGAATTTGAAGAATTCGAATGTACTTTTGTTATTGTTGCTTTTAAGAAAAGGAAGGGCCGCATATATGTCATTCCCCTTGTTGCCTCTTTCTGCGTTTGCCTTGTCTTCTCCTATCATGATCATCTTAATTACCTACTGTGTAGTTGCAGCTGAATCTGCAGGTAGGCAAATTCCCATTGCCTATCTAGAGAGAATCAAGGATGATTTCAACAAAAGATATGCTGGTGGAAAAGCTGGGACTGCAACAGCCAATGGACTGAACAGAGAATTTGGACCAAAGCTGAAGGAGCACATGAAGTACTGTGGTGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTGTTGGTGGATAAAACTGATAATCTCCGCTCTCAGGCCCAAGATTTCAAGCAACAAGGAACAAAAATGAGAAGGAAGATGTGGTTTCAGAATATGAAGATGAAGTTGATTGTTGTGGGGATTGTTGTTGCCTTAGGCCTCGTCATATTTTTGTCTGCTTGCGGTGGTTTCAAGTGTGTTTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

9.25

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 209 - 257 3.6e-09 Regulated-SNARE-like domain
Synaptobrevin PF00957 268 - 335 1.1e-25 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 885
AccII CGCG 2 cut(s) 323, 491
AciI CCGC 3 cut(s) 555, 883, 1017
AclWI GGATC 4 cut(s) 293, 310, 421, 443
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 6 cut(s) 79, 270, 499, 508, 666, 764
AcuI CTGAAG 2 cut(s) 172, 800
AfaI GTAC 3 cut(s) 62, 519, 797
AfiI CCNNNNNNNGG 1 cut(s) 889
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 5 cut(s) 166, 505, 706, 904, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 7 cut(s) 27, 115, 457, 647, 731, 778, 856
AluI AGCT 7 cut(s) 27, 115, 457, 647, 731, 778, 856
Alw21I GWGCWC 1 cut(s) 789
AlwI GGATC 4 cut(s) 293, 310, 421, 443
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 4 cut(s) 154, 552, 891, 991
ApeKI GCWGC 2 cut(s) 7, 644
ApoI RAATTY 6 cut(s) 79, 270, 499, 508, 666, 764
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 3 cut(s) 552, 770, 892
AsuHPI GGTGA 6 cut(s) 64, 76, 130, 367, 458, 854
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 770
AxyI CCTNAGG 1 cut(s) 988
BalI TGGCCA 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 2 cut(s) 19, 656
BccI CCATC 2 cut(s) 146, 805
BceAI ACGGC 1 cut(s) 199
BclI TGATCA 1 cut(s) 615
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 3 cut(s) 22, 466, 654
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 3 cut(s) 8, 555, 645
BlsI GCNGC 3 cut(s) 9, 556, 646
BmcAI AGTACT 1 cut(s) 797
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 3 cut(s) 552, 770, 892
BmsI GCATC 2 cut(s) 99, 428
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 838
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 889
Bse21I CCTNAGG 1 cut(s) 988
Bse3DI GCAATG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 838
BseGI GGATG 2 cut(s) 274, 703
BseLI CCNNNNNNNGG 1 cut(s) 889
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 1 cut(s) 902
BseXI GCAGC 2 cut(s) 19, 656
BseYI CCCAGC 1 cut(s) 731
Bsh1236I CGCG 2 cut(s) 323, 491
BshFI GGCC 4 cut(s) 156, 554, 893, 993
BsiHKAI GWGCWC 1 cut(s) 789
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 181, 748
BslI CCNNNNNNNGG 1 cut(s) 889
BsmFI GGGAC 2 cut(s) 181, 748
BsnI GGCC 4 cut(s) 156, 554, 893, 993
BsoBI CYCGRG 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 789
Bsp143I GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
BspACI CCGC 3 cut(s) 555, 883, 1017
BspANI GGCC 4 cut(s) 156, 554, 893, 993
BspCNI CTCAG 1 cut(s) 901
BspFNI CGCG 2 cut(s) 323, 491
BspHI TCATGA 2 cut(s) 340, 612
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 4 cut(s) 293, 310, 421, 443
BspT104I TTCGAA 1 cut(s) 512
BsrBI CCGCTC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 672
BssECI CCNNGG 1 cut(s) 838
BssMI GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
Bst4CI ACNGT 5 cut(s) 46, 355, 635, 800, 839
Bst6I CTCTTC 2 cut(s) 244, 264
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 1015
BstDEI CTNAG 2 cut(s) 888, 988
BstDSI CCRYGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 274, 703
BstFNI CGCG 2 cut(s) 323, 491
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 7 cut(s) 21, 286, 301, 318, 416, 451, 618
BstMBI GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
BstMWI GCNNNNNNNGC 3 cut(s) 653, 737, 784
BstSFI CTRYAG 3 cut(s) 22, 466, 654
BstUI CGCG 2 cut(s) 323, 491
BstV1I GCAGC 2 cut(s) 19, 656
BstV2I GAAGAC 1 cut(s) 594
Bsu36I CCTNAGG 1 cut(s) 988
BsuRI GGCC 4 cut(s) 156, 554, 893, 993
BtgI CCRYGG 1 cut(s) 838
BtgZI GCGATG 2 cut(s) 76, 165
BtsCI GGATG 2 cut(s) 274, 703
BtsIMutI CAGTG 2 cut(s) 42, 196
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 1 cut(s) 1015
CciI TCATGA 2 cut(s) 340, 612
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 552, 770, 892
CseI GACGC 1 cut(s) 278
Csp6I GTAC 3 cut(s) 61, 518, 796
CviAII CATG 4 cut(s) 341, 462, 613, 790
CviQI GTAC 3 cut(s) 61, 518, 796
DdeI CTNAG 2 cut(s) 888, 988
DpnI GATC 7 cut(s) 20, 285, 300, 317, 415, 450, 617
DpnII GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 244, 264
EarI CTCTTC 2 cut(s) 244, 264
Eco147I AGGCCT 1 cut(s) 993
Eco47I GGWCC 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 172, 800
Eco81I CCTNAGG 1 cut(s) 988
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 270, 508
FaeI CATG 4 cut(s) 344, 465, 616, 793
FaqI GGGAC 2 cut(s) 181, 748
FatI CATG 4 cut(s) 340, 461, 612, 789
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 8, 555, 645
FokI GGATG 2 cut(s) 261, 710
Fsp4HI GCNGC 3 cut(s) 8, 555, 645
FspBI CTAG 1 cut(s) 683
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 8, 555, 645
GsaI CCCAGC 1 cut(s) 735
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 4 cut(s) 156, 554, 893, 993
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 491
Hin1II CATG 4 cut(s) 344, 465, 616, 793
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 6 cut(s) 49, 194, 344, 358, 650, 690
HpaII CCGG 1 cut(s) 75
HphI GGTGA 6 cut(s) 64, 76, 130, 367, 458, 854
Hpy166II GTNNAC 3 cut(s) 63, 72, 138
Hpy188I TCNGA 5 cut(s) 18, 283, 453, 945, 1039
Hpy188III TCNNGA 6 cut(s) 109, 307, 341, 613, 683, 833
Hpy8I GTNNAC 3 cut(s) 63, 72, 138
Hpy99I CGWCG 2 cut(s) 179, 294
HpyAV CCTTC 7 cut(s) 172, 288, 472, 543, 775, 820, 921
HpyCH4III ACNGT 5 cut(s) 46, 355, 635, 800, 839
HpyCH4V TGCA 3 cut(s) 644, 656, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 737, 784
HpyF3I CTNAG 2 cut(s) 888, 988
Hsp92II CATG 4 cut(s) 344, 465, 616, 793
HspAI GCGC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
LmnI GCTCC 1 cut(s) 784
LpnPI CCDG 9 cut(s) 88, 100, 122, 132, 411, 642, 705, 717, 875
Lsp1109I GCAGC 2 cut(s) 19, 656
LweI GCATC 2 cut(s) 99, 428
MaeI CTAG 1 cut(s) 683
MalI GATC 7 cut(s) 20, 285, 300, 317, 415, 450, 617
MbiI CCGCTC 1 cut(s) 885
MboI GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
MboII GAAGA 9 cut(s) 226, 231, 251, 487, 517, 594, 859, 943, 964
MfeI CAATTG 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 789
MlsI TGGCCA 1 cut(s) 156
MluI ACGCGT 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 32, 106, 116, 133, 182, 216, 591, 1004
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 4 cut(s) 434, 539, 623, 1042
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 145
MvnI CGCG 2 cut(s) 323, 491
MwoI GCNNNNNNNGC 3 cut(s) 653, 737, 784
NdeII GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
NlaIII CATG 4 cut(s) 344, 465, 616, 793
NmeAIII GCCGAG 1 cut(s) 82
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 36
PagI TCATGA 2 cut(s) 340, 612
PceI AGGCCT 1 cut(s) 993
PfeI GAWTC 5 cut(s) 49, 344, 358, 650, 690
PkrI GCNGC 3 cut(s) 9, 556, 646
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 731
PspPI GGNCC 3 cut(s) 552, 770, 892
PspXI VCTCGAGB 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 62, 519, 797
RsaNI GTAC 3 cut(s) 61, 518, 796
SaqAI TTAA 4 cut(s) 434, 539, 623, 1042
SatI GCNGC 3 cut(s) 8, 555, 645
Sau3AI GATC 7 cut(s) 18, 283, 298, 315, 413, 448, 615
Sau96I GGNCC 3 cut(s) 552, 770, 892
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 2 cut(s) 99, 428
SfcI CTRYAG 3 cut(s) 22, 466, 654
Sfr274I CTCGAG 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 993
SsiI CCGC 3 cut(s) 555, 883, 1017
SspI AATATT 1 cut(s) 820
SspMI CTAG 1 cut(s) 683
StuI AGGCCT 1 cut(s) 993
TaaI ACNGT 5 cut(s) 46, 355, 635, 800, 839
TaqI TCGA 6 cut(s) 37, 177, 262, 292, 308, 512
TatI WGTACW 3 cut(s) 60, 517, 795
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 5 cut(s) 49, 344, 358, 650, 690
Tru1I TTAA 4 cut(s) 434, 539, 623, 1042
Tru9I TTAA 4 cut(s) 434, 539, 623, 1042
TscAI CASTG 2 cut(s) 49, 196
TseI GCWGC 2 cut(s) 7, 644
TspDTI ATGAA 5 cut(s) 263, 329, 806, 965, 971
TspRI CASTG 2 cut(s) 49, 196
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 6 cut(s) 79, 270, 499, 508, 666, 764
XbaI TCTAGA 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 683
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.