Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4254862 .. 4255520

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTATAAGAGAATTGGGAGGTTTGAGGACGCCATTCAGATTGCAAAGCAGATGAGGGAACTGCAACTTTTAAATGATCTGCTGAGTTATAATAATGTTATTGGGTTGTATGCGACATATGGAAGATTCAAAGAGATGGTGGGAACTTTCAAGGAAATGACAAAAGCTGCCGTTCAGCCTGATGACTGCACATTCAAATCACTGGGACTTGTTTTGTTGAAATCTGGACTTTCGAAGCAGGCTGTGGGAAAGCTGGAAGTCTCAGTTAAGAAGGATTCGGGGACTGGTTTGCAGGCTTGGATGTCAGCCCTCTCTGCTGTTGTTAGAGTGAATGAAAGTAGTTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

9.41

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	26 - 68	3.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	30
AgsI	TTSAA	4 cut(s)	130, 151, 196, 220
AluBI	AGCT	2 cut(s)	167, 253
AluI	AGCT	2 cut(s)	167, 253
Alw26I	GTCTC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	207, 289
BseGI	GGATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	74, 276
BseNI	ACTGG	2 cut(s)	207, 289
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	219, 295
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	219, 295
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	75, 275
BspT104I	TTCGAA	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	207, 289
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	240, 294
BstDEI	CTNAG	2 cut(s)	83, 262
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	240, 294
CseI	GACGC	1 cut(s)	38
CviJI	RGCY	6 cut(s)	167, 178, 242, 253, 296, 308
CviKI_1	RGCY	6 cut(s)	167, 178, 242, 253, 296, 308
DdeI	CTNAG	2 cut(s)	83, 262
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	1 cut(s)	72
FaiI	YATR	7 cut(s)	6, 90, 111, 118, 120, 345, 347
FaqI	GGGAC	2 cut(s)	219, 295
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	126, 275
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	44, 64, 189, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	83, 262
Hsp92I	GRCGYC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	188, 192, 210, 224, 239, 270, 278
Lsp1109I	GCAGC	1 cut(s)	154
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	135
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	4 cut(s)	12, 19, 48, 320
MseI	TTAA	2 cut(s)	71, 267
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	126, 275
PkrI	GCNGC	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	71, 267
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	76
SetI	ASST	3 cut(s)	23, 169, 255
SfuI	TTCGAA	1 cut(s)	233
Sse9I	AATT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	126, 275
Tru1I	TTAA	2 cut(s)	71, 267
Tru9I	TTAA	2 cut(s)	71, 267
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.