RchiOBHm_Chr4g0390361

RIBOSOMAL protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
5723939 .. 5724190
252 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 159 bp
ATGCCGGACGTTGAGACCGATGTGGCGGCAGCCGGAGTCCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTAAATTTTTGTTTGTTTCTCTTAATTTTCGCCTATGTTGTGACTTTTGATGTTGGTACTCTATATGAAGTTAATTTACCGTATTGCTGA

Protein Analysis

52

Amino Acids

5.9

Weight (kDa)

6.0

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 53
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 73
BarI GAAGNNNNNNTAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 8
BisI GCNGC 2 cut(s) 27, 30
BlsI GCNGC 2 cut(s) 28, 31
BsaI GGTCTC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 5, 33
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 8
BspACI CCGC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 126
CviJI RGCY 2 cut(s) 32, 69
CviKI_1 RGCY 2 cut(s) 32, 69
CviQI GTAC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 8
FaiI YATR 3 cut(s) 105, 133, 135
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 27, 30
Fsp4HI GCNGC 2 cut(s) 27, 30
GluI GCNGC 2 cut(s) 27, 30
HapII CCGG 2 cut(s) 5, 33
HinfI GANTC 1 cut(s) 36
HpaII CCGG 2 cut(s) 5, 33
Hpy188III TCNNGA 2 cut(s) 40, 58
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 9, 53
HpySE526I ACGT 2 cut(s) 9, 53
LpnPI CCDG 2 cut(s) 18, 46
Lsp1109I GCAGC 1 cut(s) 41
MaeII ACGT 2 cut(s) 9, 53
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 2 cut(s) 55, 58
MluCI AATT 3 cut(s) 73, 93, 142
MlyI GAGTC 1 cut(s) 45
MseI TTAA 3 cut(s) 71, 92, 141
MspI CCGG 2 cut(s) 5, 33
NmuCI GTSAC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PkrI GCNGC 2 cut(s) 28, 31
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 53
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 71, 92, 141
SatI GCNGC 2 cut(s) 27, 30
SchI GAGTC 1 cut(s) 45
SetI ASST 3 cut(s) 12, 56, 71
SgeI CNNG 4 cut(s) 17, 45, 52, 70
Sse9I AATT 3 cut(s) 73, 93, 142
SsiI CCGC 1 cut(s) 26
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 2 cut(s) 12, 56
TaqII GACCGA 1 cut(s) 32
TasI AATT 3 cut(s) 73, 93, 142
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 71, 92, 141
Tru9I TTAA 3 cut(s) 71, 92, 141
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 150
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.