RchiOBHm_Chr4g0390371

Zeta toxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
5727679 .. 5728516
838 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGATTCGTAGGGCAGTGAGGGTAAATTCACAGATTCAATGCCACCAGAGATTTGCTAAAGCATTTACTGGATACTGCCAGCTTGTCGATAATGCCAGGCTCTACTGCACTAATGCTATGGCTGGCCCTCCTAAGCTGATAGGATGGAAGGATGGAGACAACAACCTGCTAGAGGATCCGAAAGAATTCAAATGCTTGACAGACTTGAGCAATTTGAACTCTAAAGCCGATTCGATTTACGAGCTTTACACGCACAACCCGGGCCTTATACTGGAACCTGGTTCTGTTTGGAAAGAAGCTGTTTTGTCCCCTGCAAGGCCAAGCATTCAGCGCAAGCTAAAGGCTTGCATTCAAAGAATTGAAATTTCAAGTATTACTGCTGACGAATTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zeta_toxin

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

8.63

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AclWI GGATC 2 cut(s) 170, 183
AcsI RAATTY 3 cut(s) 25, 185, 363
AfiI CCNNNNNNNGG 3 cut(s) 172, 271, 315
AgsI TTSAA 6 cut(s) 38, 190, 217, 353, 362, 369
AjnI CCWGG 2 cut(s) 95, 277
AluBI AGCT 5 cut(s) 82, 136, 244, 299, 337
AluI AGCT 5 cut(s) 82, 136, 244, 299, 337
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 2 cut(s) 170, 183
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 3 cut(s) 124, 262, 317
ApoI RAATTY 3 cut(s) 25, 185, 363
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 125, 262
AsuC2I CCSGG 2 cut(s) 260, 261
AvaI CYCGRG 1 cut(s) 259
BamHI GGATCC 1 cut(s) 175
BccI CCATC 2 cut(s) 138, 146
BciT130I CCWGG 2 cut(s) 97, 279
BciVI GTATCC 1 cut(s) 65
BcnI CCSGG 2 cut(s) 260, 261
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 174
BfuI GTATCC 1 cut(s) 65
Bme1390I CCNGG 4 cut(s) 97, 260, 261, 279
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 125, 262
BmiI GGNNCC 2 cut(s) 177, 276
BmrFI CCNGG 4 cut(s) 97, 260, 261, 279
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 260, 261
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 271, 315
Bse1I ACTGG 2 cut(s) 73, 276
BseBI CCWGG 2 cut(s) 97, 279
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 149, 157
BseLI CCNNNNNNNGG 3 cut(s) 172, 271, 315
BseNI ACTGG 2 cut(s) 73, 276
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 3 cut(s) 126, 264, 319
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 172, 271, 315
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 2 cut(s) 324, 348
BsnI GGCC 3 cut(s) 126, 264, 319
BsoBI CYCGRG 1 cut(s) 259
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 3 cut(s) 126, 264, 319
BspLI GGNNCC 2 cut(s) 177, 276
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 170, 183
BsrI ACTGG 2 cut(s) 73, 276
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 97, 279
BstC8I GCNNGC 4 cut(s) 80, 124, 335, 346
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 149, 157
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 250, 330
BstNI CCWGG 2 cut(s) 97, 279
BstSCI CCNGG 4 cut(s) 95, 258, 259, 277
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 126, 264, 319
BtsCI GGATG 2 cut(s) 149, 157
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 4 cut(s) 80, 124, 335, 346
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 125, 262
Cfr9I CCCGGG 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 277
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 95, 277
FaiI YATR 2 cut(s) 119, 269
FaqI GGGAC 1 cut(s) 292
FokI GGATG 2 cut(s) 156, 164
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 332
HaeIII GGCC 3 cut(s) 126, 264, 319
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 333
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 3 cut(s) 4, 34, 230
HpaII CCGG 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 108, 314, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 330
HpyF3I CTNAG 1 cut(s) 132
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 175
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MluCI AATT 6 cut(s) 25, 185, 211, 357, 363, 386
MnlI CCTC 3 cut(s) 12, 138, 166
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 2 cut(s) 389, 394
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 4 cut(s) 97, 260, 261, 279
Mva1269I GAATGC 2 cut(s) 324, 348
MvaI CCWGG 2 cut(s) 97, 279
MwoI GCNNNNNNNGC 2 cut(s) 250, 330
NciI CCSGG 2 cut(s) 260, 261
NdeII GATC 1 cut(s) 175
NlaIV GGNNCC 2 cut(s) 177, 276
PctI GAATGC 2 cut(s) 324, 348
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 3 cut(s) 4, 34, 230
Psp6I CCWGG 2 cut(s) 95, 277
PspGI CCWGG 2 cut(s) 95, 277
PspN4I GGNNCC 2 cut(s) 177, 276
PspPI GGNCC 2 cut(s) 125, 262
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 2 cut(s) 389, 394
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 125, 262
ScrFI CCNGG 4 cut(s) 97, 260, 261, 279
SetI ASST 7 cut(s) 84, 138, 168, 246, 280, 301, 339
SexAI ACCWGGT 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 6 cut(s) 25, 185, 211, 357, 363, 386
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 4 cut(s) 95, 258, 259, 277
TaqI TCGA 2 cut(s) 87, 233
TasI AATT 6 cut(s) 25, 185, 211, 357, 363, 386
TfiI GAWTC 3 cut(s) 4, 34, 230
Tru1I TTAA 2 cut(s) 389, 394
Tru9I TTAA 2 cut(s) 389, 394
TscAI CASTG 1 cut(s) 21
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 3 cut(s) 25, 185, 363
XmaI CCCGGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.