RchiOBHm_Chr4g0390381

Zeta toxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
5728598 .. 5729295
698 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGCTCCAATCTGCTGAATTGGTGCACCGATCATCCACGGATGCTGCATCGTCCCTCCTAGTGACTGCACTCAACGAAGGACGGGATGTGATCATGGATGGCACTCTATCATGGGCACCCTTTGTCGTTCAGACAATAGCAATGGCCCGAAATGTTCACAACTGCCGATACCGGATGGGAGTTGGATACAAGGTGGCTGATGATGGCACCATCACTGAAAATTATTGGGAACAAGTGAAGAAGAAGAGGATGAGCATCAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zeta_toxin

Protein Analysis

88

Amino Acids

9.85

Weight (kDa)

8.89

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 115, 206
Alw21I GWGCWC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 23
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 145
BaeGI GKGCMC 2 cut(s) 27, 118
BanI GGYRCC 2 cut(s) 115, 206
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 31
BccI CCATC 4 cut(s) 92, 169, 197, 218
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 1 cut(s) 90
BfaI CTAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 117, 208
BmsI GCATC 2 cut(s) 31, 56
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 6 cut(s) 32, 46, 91, 103, 180, 255
BseJI GATNNNNATC 1 cut(s) 254
BseMI GCAATG 1 cut(s) 147
BseSI GKGCMC 2 cut(s) 27, 118
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 2 cut(s) 115, 206
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 27, 118
Bsp143I GATC 2 cut(s) 29, 90
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 117, 208
BspT107I GGYRCC 2 cut(s) 115, 206
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 29, 90
Bst6I CTCTTC 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 6 cut(s) 32, 46, 91, 103, 180, 255
BstKTI GATC 2 cut(s) 32, 93
BstMBI GATC 2 cut(s) 29, 90
BstSLI GKGCMC 2 cut(s) 27, 118
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 6 cut(s) 32, 46, 91, 103, 180, 255
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 2 cut(s) 94, 111
CviJI RGCY 2 cut(s) 146, 197
CviKI_1 RGCY 2 cut(s) 146, 197
DpnI GATC 2 cut(s) 31, 92
DpnII GATC 2 cut(s) 29, 90
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
FaeI CATG 2 cut(s) 97, 114
FaiI YATR 2 cut(s) 95, 112
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 93, 110
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 6 cut(s) 19, 53, 98, 110, 187, 262
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 97, 114
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 25, 157
Hpy188I TCNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 25, 157
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 25, 47, 68
Hsp92II CATG 2 cut(s) 97, 114
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 29, 90
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 1 cut(s) 185
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 31, 56
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 31, 92
MboI GATC 2 cut(s) 29, 90
MboII GAAGA 3 cut(s) 250, 253, 256
MhlI GDGCHC 2 cut(s) 27, 118
MluCI AATT 2 cut(s) 17, 220
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 2 cut(s) 65, 240
MseI TTAA 1 cut(s) 265
MspI CCGG 1 cut(s) 172
NdeII GATC 2 cut(s) 29, 90
NlaIII CATG 2 cut(s) 97, 114
NlaIV GGNNCC 2 cut(s) 117, 208
NmuCI GTSAC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 117, 208
PspPI GGNCC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 29, 90
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 2 cut(s) 27, 118
SetI ASST 1 cut(s) 195
SfaNI GCATC 2 cut(s) 31, 56
SgeI CNNG 9 cut(s) 49, 71, 95, 106, 123, 159, 184, 202, 245
Sse9I AATT 2 cut(s) 17, 220
SspMI CTAG 1 cut(s) 59
TasI AATT 2 cut(s) 17, 220
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 220
VneI GTGCAC 1 cut(s) 23
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.