RchiOBHm_Chr4g0392381

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
7795707 .. 7798785
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGACCATGACTTTGTACAAAGGACCTGTTATGAGAAACTTATGGAGTCCACTAATCCATATTCCAGGAAAATCTTCCATCCATGAGAACTGGTTGAAGGGTTCAATTCTAACTGTTGCTAGCTGCATAGCATGGTCTTTATGGTACATTATGCAGCTAGGTTCTGCTGATTCGTACAATGGAAAGGTAGAGTTTTATTTACAGGCAATCACATTAAAAAGATATCCTGCAAAACTATCACTGACAACATGGATGAGCTTCCTAGGGGCAGCACAGTCAGCTATCTTCGCAGTTTTTATAGAACATAAACAACCTGCTTGGACAATTGGATTCAACATTGACCTCTGGTCCATTTTGTACTCTATCAAGTTTCAGGATTCTGAAAATGGAGGGGTGCGCTCTGGCCTAATTCTCTTTATTAAACTATGGTGCACATTAGAGAAAGGACCTGTCTTTGTGACCATGTTTGATCCCGTTTCGACAATATTGGTGGCAATTCGAAAGACAGACATTGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

9.42

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 322, 507
AclWI GGATC 1 cut(s) 464
AfaI GTAC 4 cut(s) 17, 146, 176, 359
AgsI TTSAA 3 cut(s) 97, 105, 334
AhdI GACNNNNNGTC 1 cut(s) 346
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 4 cut(s) 123, 157, 258, 281
AluI AGCT 4 cut(s) 123, 157, 258, 281
Alw21I GWGCWC 1 cut(s) 434
Alw44I GTGCAC 1 cut(s) 430
AlwI GGATC 1 cut(s) 464
AoxI GGCC 1 cut(s) 403
ApaLI GTGCAC 1 cut(s) 430
ApeKI GCWGC 3 cut(s) 123, 154, 269
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 73
AspA2I CCTAGG 1 cut(s) 262
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 3 cut(s) 23, 348, 446
AsuII TTCGAA 1 cut(s) 499
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 3 cut(s) 23, 348, 446
AvrII CCTAGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 3 cut(s) 110, 166, 281
BccI CCATC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 3 cut(s) 120, 158, 263
BfuAI ACCTGC 2 cut(s) 322, 507
BisI GCNGC 3 cut(s) 124, 155, 270
BlnI CCTAGG 1 cut(s) 262
BlsI GCNGC 3 cut(s) 125, 156, 271
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 3 cut(s) 23, 348, 446
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgT120I GGNCC 3 cut(s) 23, 348, 446
BmrFI CCNGG 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 78, 258
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 3 cut(s) 110, 166, 281
BshFI GGCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 434
BsnI GGCC 1 cut(s) 405
Bsp119I TTCGAA 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 434
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 1 cut(s) 469
BspANI GGCC 1 cut(s) 405
BspMI ACCTGC 2 cut(s) 322, 507
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 499
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 115, 276
BstAUI TGTACA 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 121
BstF5I GGATG 2 cut(s) 78, 258
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 1 cut(s) 472
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 2 cut(s) 278, 287
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 110, 166, 281
BsuRI GGCC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 78, 258
BtsIMutI CAGTG 1 cut(s) 239
BveI ACCTGC 2 cut(s) 322, 507
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 3 cut(s) 23, 348, 446
Csp6I GTAC 4 cut(s) 16, 145, 175, 358
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 5 cut(s) 7, 83, 132, 249, 463
CviJI RGCY 5 cut(s) 123, 157, 258, 281, 405
CviKI_1 RGCY 5 cut(s) 123, 157, 258, 281, 405
CviQI GTAC 4 cut(s) 16, 145, 175, 358
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DriI GACNNNNNGTC 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 262
Eco32I GATATC 1 cut(s) 224
Eco47I GGWCC 3 cut(s) 23, 348, 446
EcoO109I RGGNCCY 2 cut(s) 23, 446
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 5 cut(s) 10, 86, 135, 252, 466
FatI CATG 5 cut(s) 6, 82, 131, 248, 462
Fnu4HI GCNGC 3 cut(s) 124, 155, 270
FokI GGATG 2 cut(s) 65, 265
Fsp4HI GCNGC 3 cut(s) 124, 155, 270
FspBI CTAG 3 cut(s) 120, 158, 263
GlaI GCGC 1 cut(s) 398
GluI GCNGC 3 cut(s) 124, 155, 270
HaeIII GGCC 1 cut(s) 405
HhaI GCGC 1 cut(s) 399
Hin1II CATG 5 cut(s) 10, 86, 135, 252, 466
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HinfI GANTC 4 cut(s) 46, 170, 330, 377
Hpy166II GTNNAC 2 cut(s) 50, 432
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 50, 432
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 115, 276
HpyCH4V TGCA 4 cut(s) 126, 154, 230, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 287
Hsp92II CATG 5 cut(s) 10, 86, 135, 252, 466
HspAI GCGC 1 cut(s) 397
Kzo9I GATC 1 cut(s) 469
Lsp1109I GCAGC 3 cut(s) 110, 166, 281
MaeI CTAG 3 cut(s) 120, 158, 263
MaeIII GTNAC 1 cut(s) 457
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 2 cut(s) 66, 277
MfeI CAATTG 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 4 cut(s) 105, 324, 408, 495
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 2 cut(s) 353, 383
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 2 cut(s) 215, 420
MspR9I CCNGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 278, 287
NdeII GATC 1 cut(s) 469
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 5 cut(s) 10, 86, 135, 252, 466
NmuCI GTSAC 1 cut(s) 457
NspV TTCGAA 1 cut(s) 499
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 170, 330, 377
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 3 cut(s) 125, 156, 271
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PpuMI RGGWCCY 2 cut(s) 23, 446
Psp5II RGGWCCY 2 cut(s) 23, 446
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspPI GGNCC 3 cut(s) 23, 348, 446
PspPPI RGGWCCY 2 cut(s) 23, 446
RsaI GTAC 4 cut(s) 17, 146, 176, 359
RsaNI GTAC 4 cut(s) 16, 145, 175, 358
SaqAI TTAA 2 cut(s) 215, 420
SatI GCNGC 3 cut(s) 124, 155, 270
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 3 cut(s) 23, 348, 446
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 434
SfuI TTCGAA 1 cut(s) 499
SinI GGWCC 3 cut(s) 23, 348, 446
Sse9I AATT 4 cut(s) 105, 324, 408, 495
SspI AATATT 1 cut(s) 486
SspMI CTAG 3 cut(s) 120, 158, 263
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 115, 276
TaqI TCGA 2 cut(s) 479, 499
TasI AATT 4 cut(s) 105, 324, 408, 495
TatI WGTACW 2 cut(s) 15, 357
TfiI GAWTC 3 cut(s) 170, 330, 377
Tru1I TTAA 2 cut(s) 215, 420
Tru9I TTAA 2 cut(s) 215, 420
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 3 cut(s) 123, 154, 269
Tsp45I GTSAC 1 cut(s) 457
TspRI CASTG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 23, 348, 446
XmaJI CCTAGG 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 3 cut(s) 120, 158, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.