RchiOBHm_Chr4g0393071

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
8556893 .. 8560173
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGTACTTGGTCAATCTCTATTCAAAAAGAAAATTGTACTTTGTTAATCAAGCACTCAAAGAAGTGGAGGCTGAAACAGGACACAAGTTCCGCTGCTTGATTTCGGATGCATTTCTTTGGTTTTCAGGGGACATTGCCGAGAAAATGAATGTCCCTTGGGTGACTACATGGAGTGGACCACGCCCGCTGCTTGTTCATCTGGAGACTAATATGATCAAAGAAAAAGTGGGAGCTCCTGGGCAAGAAGACAAGACACTGGATTTTCTTCCAGAATTCTCAAATAAGTTCCGAGCATCTGACTTACTTTTGAGAGAAAATCTGCACACAGTGAGCGTAAATGTCACCCAACATAATTTCACTCGTATTCATTTAGTGAACAGAGTTTTAATTATTTCGGGTTCGACCCATTCAAGACAGAATGTGTCTTTTAATTACAATCCCATTACAGGGAAACACCCTTTGATTCCTATTGTGAAGAAATCAATTGTAGGGATGTGTGTGTTTGTTTATTTTTGTGGCTGCACCCGGATGTCTGAATGGGTTGCCTACGTACCCTGGGAGAGGGATCAAGCCATTCGTAGTTCAAGAATTCCAATGGTGTATTTCTTCTGTAGACGCTGGAATTTAATTTGGGCACCCCGATGTGTTGAATATTTTACTGGTCCGTGTAAATGGGCTTTTGTGTTGTTGATAACAAATTTAGCCGGGCCCAAACATCGGGATAAACTGTTCGGAAATTGGTTTCCGCAATTCAGCAATTGGACACCCATCCTTTTTATGTCCACACCCAATTTTAAATCCAGATCTGAAACTCTAGGCCCAAACCACATAGCTAAGAGAAAAGCTTCTAGCCGCATAACAGCTCGTCGTGCTCATCCCAATCGATTTGATAAGACTGAGAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

302

Amino Acids

35.23

Weight (kDa)

9.94

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 1 cut(s) 613
AciI CCGC 4 cut(s) 91, 185, 746, 853
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 4 cut(s) 272, 588, 622, 697
AdeI CACNNNGTG 1 cut(s) 328
AfaI GTAC 3 cut(s) 5, 38, 552
AfiI CCNNNNNNNGG 4 cut(s) 446, 447, 561, 717
AgsI TTSAA 4 cut(s) 24, 411, 585, 650
AjnI CCWGG 2 cut(s) 235, 554
AloI GAACNNNNNNTCC 2 cut(s) 713, 745
AluBI AGCT 4 cut(s) 233, 833, 845, 863
AluI AGCT 4 cut(s) 233, 833, 845, 863
Alw21I GWGCWC 2 cut(s) 235, 874
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 573
AoxI GGCC 2 cut(s) 707, 817
ApaI GGGCCC 1 cut(s) 711
ApeKI GCWGC 3 cut(s) 93, 187, 519
ApoI RAATTY 4 cut(s) 272, 588, 622, 697
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 5 cut(s) 176, 662, 707, 708, 818
AsuC2I CCSGG 2 cut(s) 526, 706
AsuHPI GGTGA 2 cut(s) 172, 334
AvaII GGWCC 2 cut(s) 176, 662
BaeGI GKGCMC 2 cut(s) 637, 711
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 2 cut(s) 235, 711
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 235, 874
BbvI GCAGC 3 cut(s) 80, 174, 506
BccI CCATC 1 cut(s) 776
BciT130I CCWGG 2 cut(s) 237, 556
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 2 cut(s) 526, 706
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 815, 849
BfmI CTRYAG 1 cut(s) 610
BglII AGATCT 1 cut(s) 803
BisI GCNGC 4 cut(s) 94, 188, 520, 853
BlsI GCNGC 4 cut(s) 95, 189, 521, 854
Bme1390I CCNGG 4 cut(s) 237, 526, 556, 706
Bme18I GGWCC 2 cut(s) 176, 662
BmgT120I GGNCC 5 cut(s) 176, 662, 707, 708, 818
BmiI GGNNCC 2 cut(s) 636, 709
BmrFI CCNGG 4 cut(s) 237, 526, 556, 706
BmsI GCATC 2 cut(s) 97, 302
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 526, 706
Bsa29I ATCGAT 1 cut(s) 883
BsaAI YACGTR 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 155, 236, 554, 555
Bsc4I CCNNNNNNNGG 4 cut(s) 446, 447, 561, 717
Bse1I ACTGG 2 cut(s) 261, 664
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 237, 556
BseCI ATCGAT 1 cut(s) 883
BseDI CCNNGG 4 cut(s) 155, 236, 554, 555
BseGI GGATG 5 cut(s) 112, 498, 534, 768, 874
BseLI CCNNNNNNNGG 4 cut(s) 446, 447, 561, 717
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 2 cut(s) 261, 664
BseSI GKGCMC 2 cut(s) 637, 711
BseXI GCAGC 3 cut(s) 80, 174, 506
BsgI GTGCAG 2 cut(s) 305, 505
BshFI GGCC 2 cut(s) 709, 819
BshNI GGYRCC 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 883
BsiHKAI GWGCWC 2 cut(s) 235, 874
BsiSI CCGG 2 cut(s) 526, 705
BslFI GGGAC 2 cut(s) 137, 143
BslI CCNNNNNNNGG 4 cut(s) 446, 447, 561, 717
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 137, 143
BsnI GGCC 2 cut(s) 709, 819
Bsp120I GGGCCC 1 cut(s) 707
Bsp1286I GDGCHC 4 cut(s) 235, 637, 711, 874
Bsp143I GATC 3 cut(s) 213, 565, 803
BspACI CCGC 4 cut(s) 91, 185, 746, 853
BspANI GGCC 2 cut(s) 709, 819
BspCNI CTCAG 1 cut(s) 889
BspDI ATCGAT 1 cut(s) 883
BspLI GGNNCC 2 cut(s) 636, 709
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 2 cut(s) 261, 664
BssECI CCNNGG 4 cut(s) 155, 236, 554, 555
BssMI GATC 3 cut(s) 213, 565, 803
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 237, 556
Bst4CI ACNGT 2 cut(s) 328, 729
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 834, 897
BstENI CCTNNNNNAGG 1 cut(s) 559
BstF5I GGATG 5 cut(s) 112, 498, 534, 768, 874
BstKTI GATC 3 cut(s) 216, 568, 806
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 213, 565, 803
BstMWI GCNNNNNNNGC 1 cut(s) 869
BstNI CCWGG 2 cut(s) 237, 556
BstSCI CCNGG 4 cut(s) 235, 524, 554, 704
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 2 cut(s) 637, 711
BstSNI TACGTA 1 cut(s) 550
BstV1I GCAGC 3 cut(s) 80, 174, 506
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
Bsu15I ATCGAT 1 cut(s) 883
BsuRI GGCC 2 cut(s) 709, 819
BsuTUI ATCGAT 1 cut(s) 883
BtsCI GGATG 5 cut(s) 112, 498, 534, 768, 874
BtsIMutI CAGTG 2 cut(s) 254, 333
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 5 cut(s) 176, 662, 707, 708, 818
ClaI ATCGAT 1 cut(s) 883
CseI GACGC 1 cut(s) 624
Csp6I GTAC 3 cut(s) 4, 37, 551
CviAII CATG 1 cut(s) 168
CviQI GTAC 3 cut(s) 4, 37, 551
DdeI CTNAG 2 cut(s) 834, 897
DpnI GATC 3 cut(s) 215, 567, 805
DpnII GATC 3 cut(s) 213, 565, 803
DraI TTTAAA 1 cut(s) 796
DraIII CACNNNGTG 1 cut(s) 328
Ecl136II GAGCTC 1 cut(s) 233
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 2 cut(s) 235, 711
Eco47I GGWCC 2 cut(s) 176, 662
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 559
EcoRI GAATTC 2 cut(s) 272, 588
EcoRII CCWGG 2 cut(s) 235, 554
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 2 cut(s) 235, 711
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 171
FaiI YATR 6 cut(s) 169, 212, 351, 779, 830, 857
FaqI GGGAC 2 cut(s) 137, 143
FatI CATG 1 cut(s) 167
FauI CCCGC 1 cut(s) 192
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 4 cut(s) 94, 188, 520, 853
FokI GGATG 5 cut(s) 119, 505, 541, 755, 861
FriOI GRGCYC 2 cut(s) 235, 711
Fsp4HI GCNGC 4 cut(s) 94, 188, 520, 853
FspBI CTAG 2 cut(s) 815, 849
GluI GCNGC 4 cut(s) 94, 188, 520, 853
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 709, 819
HapII CCGG 2 cut(s) 526, 705
HgaI GACGC 1 cut(s) 624
Hin1II CATG 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 1 cut(s) 463
HpaII CCGG 2 cut(s) 526, 705
HphI GGTGA 2 cut(s) 172, 334
Hpy166II GTNNAC 4 cut(s) 176, 376, 614, 783
Hpy188I TCNGA 6 cut(s) 106, 290, 298, 535, 734, 808
Hpy188III TCNNGA 6 cut(s) 200, 269, 411, 585, 719, 801
Hpy8I GTNNAC 4 cut(s) 176, 376, 614, 783
Hpy99I CGWCG 1 cut(s) 870
HpyCH4III ACNGT 2 cut(s) 328, 729
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 110, 322, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 869
HpyF3I CTNAG 2 cut(s) 834, 897
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 213, 565, 803
LmnI GCTCC 2 cut(s) 230, 238
Lsp1109I GCAGC 3 cut(s) 80, 174, 506
LweI GCATC 2 cut(s) 97, 302
MaeI CTAG 2 cut(s) 815, 849
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 160, 340
MalI GATC 3 cut(s) 215, 567, 805
MboI GATC 3 cut(s) 213, 565, 803
MboII GAAGA 4 cut(s) 257, 257, 487, 598
MfeI CAATTG 2 cut(s) 483, 757
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 4 cut(s) 235, 637, 711, 874
MnlI CCTC 2 cut(s) 61, 555
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 5 cut(s) 45, 386, 429, 626, 795
MslI CAYNNNNRTG 2 cut(s) 527, 640
MspA1I CMGCKG 2 cut(s) 93, 187
MspI CCGG 2 cut(s) 526, 705
MspR9I CCNGG 4 cut(s) 237, 526, 556, 706
MunI CAATTG 2 cut(s) 483, 757
MvaI CCWGG 2 cut(s) 237, 556
MwoI GCNNNNNNNGC 1 cut(s) 869
NciI CCSGG 2 cut(s) 526, 706
NdeII GATC 3 cut(s) 213, 565, 803
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 636, 709
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 160, 340
NsiI ATGCAT 1 cut(s) 112
PasI CCCWGGG 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 4 cut(s) 95, 189, 521, 854
Ppu21I YACGTR 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 235, 554
PspGI CCWGG 2 cut(s) 235, 554
PspN4I GGNNCC 2 cut(s) 636, 709
PspOMI GGGCCC 1 cut(s) 707
PspPI GGNCC 5 cut(s) 176, 662, 707, 708, 818
PsuI RGATCY 1 cut(s) 803
RsaI GTAC 3 cut(s) 5, 38, 552
RsaNI GTAC 3 cut(s) 4, 37, 551
RseI CAYNNNNRTG 2 cut(s) 527, 640
SacI GAGCTC 1 cut(s) 235
SaqAI TTAA 5 cut(s) 45, 386, 429, 626, 795
SatI GCNGC 4 cut(s) 94, 188, 520, 853
Sau3AI GATC 3 cut(s) 213, 565, 803
Sau96I GGNCC 5 cut(s) 176, 662, 707, 708, 818
ScrFI CCNGG 4 cut(s) 237, 526, 556, 706
SduI GDGCHC 4 cut(s) 235, 637, 711, 874
SetI ASST 5 cut(s) 235, 552, 835, 847, 865
SfaNI GCATC 2 cut(s) 97, 302
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 2 cut(s) 176, 662
SmiMI CAYNNNNRTG 2 cut(s) 527, 640
SnaBI TACGTA 1 cut(s) 550
SsiI CCGC 4 cut(s) 91, 185, 746, 853
SspI AATATT 1 cut(s) 653
SspMI CTAG 2 cut(s) 815, 849
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 4 cut(s) 235, 524, 554, 704
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 328, 729
TaiI ACGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 401, 883
TatI WGTACW 2 cut(s) 3, 36
TauI GCSGC 1 cut(s) 855
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 5 cut(s) 45, 386, 429, 626, 795
Tru9I TTAA 5 cut(s) 45, 386, 429, 626, 795
TscAI CASTG 2 cut(s) 261, 333
TseFI GTSAC 2 cut(s) 160, 340
TseI GCWGC 3 cut(s) 93, 187, 519
Tsp45I GTSAC 2 cut(s) 160, 340
TspDTI ATGAA 3 cut(s) 161, 185, 356
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 261, 333
VpaK11BI GGWCC 2 cut(s) 176, 662
XagI CCTNNNNNAGG 1 cut(s) 559
XapI RAATTY 4 cut(s) 272, 588, 622, 697
XmiI GTMKAC 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 2 cut(s) 815, 849
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.