RchiOBHm_Chr4g0396451

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
12607930 .. 12608175
246 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGGGCGCTAAACTAAAGGGTGTCAGCTATGATTACGTAGAAGAAGACCTTCCCAACAAGAACCAATTGTTATTACAGTACAACCCAGTCCACAAGAAGGTCCCAGTTCTTGTTCACCATGAAAAACCAATCGCGGAGTCGATGATTATTCTTGAATATATTGAACAGACATGGCCGGATAATCCATTGCTGCCCAAGGATGCTTATGAGAGGTCCATCGTTTGGTTTTGGGCAAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.44

Weight (kDa)

5.48

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N_2 PF13409 3 - 56 2.2e-08 Glutathione S-transferase, N-terminal domain
GST_N PF02798 4 - 55 4.1e-15 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 4 - 61 1e-07 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 173
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 97, 222
AgsI TTSAA 2 cut(s) 155, 164
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 100, 213
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 2 cut(s) 100, 213
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 100, 213
BmgT120I GGNCC 2 cut(s) 100, 213
BmiI GGNNCC 1 cut(s) 102
BmrI ACTGGG 2 cut(s) 80, 98
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 2 cut(s) 80, 98
BpiI GAAGAC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 222
Bse1I ACTGG 2 cut(s) 86, 104
Bse3DI GCAATG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 97, 222
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 86, 104
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 97, 222
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 175
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 175
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 86, 104
BssECI CCNNGG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 37
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 205
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 100, 213
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 119, 171
CviJI RGCY 2 cut(s) 27, 175
CviKI_1 RGCY 2 cut(s) 27, 175
CviQI GTAC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 173
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 100, 213
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 122, 174
FaiI YATR 6 cut(s) 30, 120, 159, 172, 207, 239
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 118, 170
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 191
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 122, 174
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 91, 115
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 2 cut(s) 91, 115
HpyAV CCTTC 2 cut(s) 59, 91
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 122, 174
HspAI GCGC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 99, 117, 189
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 36
MboII GAAGA 2 cut(s) 53, 56
MfeI CAATTG 1 cut(s) 65
MluCI AATT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 48
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 65
MvnI CGCG 1 cut(s) 134
NlaIII CATG 2 cut(s) 122, 174
NlaIV GGNNCC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 2 cut(s) 100, 213
PspPPI RGGWCCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SatI GCNGC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 100, 213
SchI GAGTC 1 cut(s) 146
SetI ASST 5 cut(s) 29, 39, 51, 102, 215
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 100, 213
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 140
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 78
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 135
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 100, 213
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.