RchiOBHm_Chr4g0397461

U4 U6.U5 tri-snRNP-associated protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
13867376 .. 13867773
398 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
ATGGTGACACTTAATTTTACTGGAGTGTTCTGGCCTCAGATAGCAAGGATGAGGTATAGAGTCACCAGATTACCCCAGTGTCTTATTCTCAATATGCACCGATTTATAAAGAACAAGTTCTTCGAGAAGGTGGAGAAGAATCCTACTTTAGTGGACTTTCCTGTGAGGAACCTTGAATTGAGAGACTGCATGCCTTTGCCATGGCCGGAAGAGATTGGGAGATTGGTTCTATGTATGATTTGA

Protein Analysis

80

Amino Acids

9.66

Weight (kDa)

9.64

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 203
AgsI TTSAA 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 177
AoxI GGCC 2 cut(s) 32, 203
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 16, 55
BcoDI GTCTC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 25, 76
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 25, 76
BshFI GGCC 2 cut(s) 34, 205
BsiSI CCGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 2 cut(s) 34, 205
Bsp19I CCATGG 1 cut(s) 200
BspANI GGCC 2 cut(s) 34, 205
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 25, 76
BssECI CCNNGG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 34, 205
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 191
CviAII CATG 2 cut(s) 190, 201
CviJI RGCY 2 cut(s) 34, 205
CviKI_1 RGCY 2 cut(s) 34, 205
DdeI CTNAG 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 193, 204
FaiI YATR 7 cut(s) 57, 95, 107, 191, 202, 232, 236
FatI CATG 2 cut(s) 189, 200
FokI GGATG 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 34, 205
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 193, 204
HinfI GANTC 2 cut(s) 60, 139
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 16, 55
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 97, 189
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 2 cut(s) 193, 204
LpnPI CCDG 6 cut(s) 6, 16, 79, 89, 174, 219
MaeIII GTNAC 2 cut(s) 4, 61
MboII GAAGA 3 cut(s) 112, 148, 221
MluCI AATT 2 cut(s) 13, 176
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 3 cut(s) 45, 45, 159
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 200
NlaIII CATG 2 cut(s) 193, 204
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 2 cut(s) 4, 61
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 139
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PsiI TTATAA 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 12
SchI GAGTC 1 cut(s) 69
SetI ASST 3 cut(s) 56, 132, 174
SphI GCATGC 1 cut(s) 193
Sse9I AATT 2 cut(s) 13, 176
StyI CCWWGG 1 cut(s) 200
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 13, 176
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 4, 61
Tsp45I GTSAC 2 cut(s) 4, 61
TspRI CASTG 1 cut(s) 83
XceI RCATGY 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.