RchiOBHm_Chr4g0398381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
14899519 .. 14900001
483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ATGAATAAAAATAGGGGGGTGAAATTTGCACACCCAAAATTGCAAATTGCACACCCCTCTTATTTTTTTAATAGTATTTCATATCACATCCTTTTAGACTTCCTAAACTACCCTAAAAAATTCAGAGTTTTCTTTTTCTCTTTGGGTCCTCTCACCCTCCCCCCATTGATTGGAGCAGTTCAATTGGGAGTGTTGGCGGCTTGCGTTGTGGTTTTAGTTCTAATGGACATGGCCAGTTATCATCTCAGCCACAAGATGCTCTTCTTCAGCGGCGCCCTCTTTATCACTCTCGCCATAGGCGTCCACCTCACCCTTTACTTCCCTTCCGTCACCAGCTTCGTCAGCACCATCTCCTCCGTCGTCGTTTTCCAGAACCGTTGCTACTCCTACCTCTCCCACCTCCACGACCTTGTCTGGGACGTCACTCCCTCCCCCGATTCCGATCCCCCCCCCCCCCACCCCCCTCGATTACCACAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.2

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 2 cut(s) 197, 270
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 23, 119
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 3 cut(s) 273, 300, 420
AfiI CCNNNNNNNGG 2 cut(s) 170, 415
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 336, 479
AluI AGCT 2 cut(s) 336, 479
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 23, 119
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 31, 145, 301, 322
AvaII GGWCC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 272
BccI CCATC 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 2 cut(s) 198, 271
BlsI GCNGC 2 cut(s) 199, 272
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 147, 274
BmsI GCATC 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 3 cut(s) 273, 300, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 415
Bse1I ACTGG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 441
BseGI GGATG 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 170, 415
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 343
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 170, 415
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 2 cut(s) 197, 270
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 147, 274
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 234
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 3 cut(s) 273, 300, 420
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 3 cut(s) 273, 300, 420
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 245, 480
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 445
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 289
CviAII CATG 1 cut(s) 229
CviJI RGCY 5 cut(s) 200, 233, 249, 336, 479
CviKI_1 RGCY 5 cut(s) 200, 233, 249, 336, 479
DdeI CTNAG 2 cut(s) 245, 480
DinI GGCGCC 1 cut(s) 274
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 146
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 82, 230, 296
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 198, 271
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 198, 271
GlaI GCGC 1 cut(s) 274
GluI GCNGC 2 cut(s) 198, 271
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 3 cut(s) 273, 300, 420
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 1 cut(s) 437
HphI GGTGA 4 cut(s) 31, 145, 301, 322
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 125, 442
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 2 cut(s) 362, 365
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 29, 43, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 245, 480
HpySE526I ACGT 1 cut(s) 420
Hsp92I GRCGYC 3 cut(s) 273, 300, 420
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 273
KasI GGCGCC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 442
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 247, 346, 383, 400
LweI GCATC 1 cut(s) 246
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 328, 421
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 2 cut(s) 253, 256
MfeI CAATTG 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 5 cut(s) 23, 38, 45, 119, 182
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 273
Mox20I TGGCCA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 233
MseI TTAA 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 270
MunI CAATTG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 342
NarI GGCGCC 1 cut(s) 273
NdeII GATC 1 cut(s) 442
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 147, 274
NmuCI GTSAC 2 cut(s) 328, 421
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PfeI GAWTC 1 cut(s) 437
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 199, 272
PluTI GGCGCC 1 cut(s) 276
PpuMI RGGWCCY 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 147, 274
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PsrI GAACNNNNNNTAC 2 cut(s) 365, 397
PsyI GACNNNGTC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 198, 271
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 146
SetI ASST 7 cut(s) 309, 338, 393, 402, 411, 423, 481
SfaNI GCATC 1 cut(s) 246
SfoI GGCGCC 1 cut(s) 274
SinI GGWCC 1 cut(s) 146
Sse9I AATT 5 cut(s) 23, 38, 45, 119, 182
SsiI CCGC 2 cut(s) 197, 270
SspDI GGCGCC 1 cut(s) 272
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 423
TaqI TCGA 1 cut(s) 466
TasI AATT 5 cut(s) 23, 38, 45, 119, 182
TauI GCSGC 2 cut(s) 200, 273
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 2 cut(s) 328, 421
Tsp45I GTSAC 2 cut(s) 328, 421
TspDTI ATGAA 2 cut(s) 17, 69
TspGWI ACGGA 2 cut(s) 316, 346
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 23, 119
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.