RchiOBHm_Chr4g0398881

Choline monooxygenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
15801475 .. 15803227
1753 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGGAGTCGACGATGACGATGACTATGACTGTGACAATGACGAGTCTCAAATCCAAACCGATGCCACCCAGAAGCCCTTACCTTCCCCATTCATTGAACTCGACAAGAACCTTCAAGTCCTTGTCTTTGTCTCTCGCCAGTCCTTCAGTGGCAGCCCCGACACTGGTGGATCAATTCGACCCGACGATCCCATTTGTTGTGTGTCGAGATGAGCATGGCAAGCTTCAAGCTTTCCACAATGTCTGTCTTCATCATGCCACACTTGTTGCCTATGGAAGTGGCCGAAAGTCGTGCTTTGAGTGCCCTACCATGTTAGTCTATTGTGACAACTACTTGGATGGAGGATATCATGTGCCTTACGCACATAAAGACCTAGCATCTGGTCTCAAGCTCGATAGTTACTCTACCAAAGTATATGAAAAGGTCAGCATTCAAGAGTGTGAAGCTGGTTCAAAAGAGGGGGGAAATGATGATCGGCTGGGATCAAAAGCACCATTTTCACTCTGCTTCTTGACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

18.95

Weight (kDa)

7.02

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rieske PF00355 64 - 102 3.3e-06 Rieske [2Fe-2S] domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AclWI GGATC 3 cut(s) 177, 181, 490
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 5 cut(s) 97, 115, 227, 434, 453
AluBI AGCT 4 cut(s) 223, 230, 391, 446
AluI AGCT 4 cut(s) 223, 230, 391, 446
Alw26I GTCTC 3 cut(s) 50, 135, 389
AlwI GGATC 3 cut(s) 177, 181, 490
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 332
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BcoDI GTCTC 3 cut(s) 50, 135, 389
BfaI CTAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmsI GCATC 2 cut(s) 51, 386
BpiI GAAGAC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 138, 168
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 138, 168
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 478
BshFI GGCC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 3 cut(s) 50, 135, 389
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 4 cut(s) 169, 186, 472, 482
BspANI GGCC 1 cut(s) 282
BspPI GGATC 3 cut(s) 177, 181, 490
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 2 cut(s) 138, 168
BssMI GATC 4 cut(s) 169, 186, 472, 482
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 4 cut(s) 172, 189, 475, 485
BstMAI GTCTC 3 cut(s) 50, 135, 389
BstMBI GATC 4 cut(s) 169, 186, 472, 482
BstMWI GCNNNNNNNGC 2 cut(s) 220, 300
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 153, 161
Cac8I GCNNGC 1 cut(s) 221
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 5 cut(s) 215, 254, 310, 350, 519
CviJI RGCY 8 cut(s) 75, 155, 223, 230, 282, 391, 446, 478
CviKI_1 RGCY 8 cut(s) 75, 155, 223, 230, 282, 391, 446, 478
DpnI GATC 4 cut(s) 171, 188, 474, 484
DpnII GATC 4 cut(s) 169, 186, 472, 482
EaeI YGGCCR 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 347
FaeI CATG 5 cut(s) 218, 257, 313, 353, 522
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 5 cut(s) 214, 253, 309, 349, 518
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 374
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 5 cut(s) 218, 257, 313, 353, 522
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 2 cut(s) 221, 228
HinfI GANTC 2 cut(s) 5, 43
Hpy166II GTNNAC 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 206, 434, 511
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 13, 187
HpyAV CCTTC 3 cut(s) 92, 121, 153
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 300
Hsp92II CATG 5 cut(s) 218, 257, 313, 353, 522
Kzo9I GATC 4 cut(s) 169, 186, 472, 482
LpnPI CCDG 6 cut(s) 82, 149, 151, 366, 432, 464
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 51, 386
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 3 cut(s) 31, 323, 398
MalI GATC 4 cut(s) 171, 188, 474, 484
MboI GATC 4 cut(s) 169, 186, 472, 482
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 14, 52
MnlI CCTC 2 cut(s) 335, 451
Mva1269I GAATGC 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 220, 300
NdeII GATC 4 cut(s) 169, 186, 472, 482
NlaIII CATG 5 cut(s) 218, 257, 313, 353, 522
NmuCI GTSAC 2 cut(s) 31, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 429
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 13, 51
PpsI GAGTC 2 cut(s) 13, 51
PspFI CCCAGC 1 cut(s) 478
SalI GTCGAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 169, 186, 472, 482
SchI GAGTC 2 cut(s) 14, 52
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 84, 113, 225, 232, 375, 393, 426, 448
SfaNI GCATC 2 cut(s) 51, 386
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 5 cut(s) 8, 101, 177, 205, 393
TasI AATT 1 cut(s) 173
TscAI CASTG 2 cut(s) 153, 168
TseFI GTSAC 2 cut(s) 31, 323
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 2 cut(s) 31, 323
TspDTI ATGAA 3 cut(s) 81, 239, 432
TspRI CASTG 2 cut(s) 153, 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.