RchiOBHm_Chr4g0401241

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
19279940 .. 19280709
770 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGTCACCGACGGCGACAAAGGCGTCGAGGCGCGAAGCGAGGTAGAGGTAGTTCATTTGCTCGGCGTGCTTCTAGATTACTTTGCACCGGTGTTTTGGGATGATTCGTCGTCGTCACGGTCTGATCTGGCCGTGGCAGATGGGTTAGATGATGCAGAGAGAGAGAAGGTGCCTATGAGATTGGCTTTGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.1

Weight (kDa)

4.21

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 24
AgeI ACCGGT 1 cut(s) 88
AoxI GGCC 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 169
BccI CCATC 1 cut(s) 134
BceAI ACGGC 2 cut(s) 28, 116
BfaI CTAG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 169
BshTI ACCGGT 1 cut(s) 88
BsiSI CCGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 21, 67
BstPI GGTNACC 1 cut(s) 4
BstUI CGCG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 88
CseI GACGC 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 88
CviJI RGCY 2 cut(s) 131, 185
CviKI_1 RGCY 2 cut(s) 131, 185
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaiI YATR 1 cut(s) 176
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 74
GlaI GCGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 74
Hpy99I CGWCG 4 cut(s) 14, 29, 112, 115
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 86, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 67
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 102, 113
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 4, 114
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MnlI CCTC 3 cut(s) 22, 34, 40
MspI CCGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 21, 67
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 4, 114
PfeI GAWTC 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 171
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
Sau3AI GATC 1 cut(s) 124
SetI ASST 3 cut(s) 45, 51, 171
SfaNI GCATC 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 88
SspMI CTAG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 27
TfiI GAWTC 1 cut(s) 104
TseFI GTSAC 2 cut(s) 4, 114
Tsp45I GTSAC 2 cut(s) 4, 114
TspDTI ATGAA 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 73
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.