RchiOBHm_Chr4g0401681

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
19888551 .. 19896943
8393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGAATGATGAGGAAGAAAGACCTGGGATCAGGGGAGATGATGATGCTGACTCTTGCACCACTTGGCATTGGCATCCTACTGGAATTAATCTCCTTCGTTTTTCTTCTGATGGAGCGTATTTATATTCAGGTGGAAAGGAAGGAGTTCTCGTGGACTGGCAGCTAGACACAGGGAAAAAGAAATTTTTACCAAGAATTGGATCTCCACTTCTATATTTAACTGATTCTCTAGATCCTTCACTTTCTGCTATATCTTGTGCAGATAATCAAATTCACTTACAAAAAATGCCCTCAATGGAAATCACAAAGTCTATTTCAGGGATCAAGCCCCCCTTTTCTTCTCCGGATGTATATGAAGGCATATGCAGCAAGTTTGCCTTCGATGACACTGCTGGGTTAGTTGCCTTGCGCACAGAGAACTATCGCATCCAGTTTTACAGCTTGTTTGATGACCGTGAAATTTCTGAGGGCTGTTCACTCGGGATTCAAAAAGACTCTTTTGCCCTTCATTTTCTGTTCAGTTACATCCCTGCCATTCAGTCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
WD40

Protein Analysis

182

Amino Acids

20.26

Weight (kDa)

4.72

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR75_1st PF23869 20 - 89 1.1e-13 WD repeat-containing protein 75 first beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 343
AclWI GGATC 4 cut(s) 35, 208, 227, 329
AcsI RAATTY 3 cut(s) 182, 270, 459
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 488
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 163, 441
AluI AGCT 2 cut(s) 163, 441
AlwI GGATC 4 cut(s) 35, 208, 227, 329
Ama87I CYCGRG 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 343
ApeKI GCWGC 2 cut(s) 160, 366
ApoI RAATTY 3 cut(s) 182, 270, 459
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 411
AvaI CYCGRG 1 cut(s) 479
BauI CACGAG 1 cut(s) 149
BbvI GCAGC 2 cut(s) 172, 378
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 24
BfaI CTAG 2 cut(s) 164, 230
BisI GCNGC 2 cut(s) 161, 367
BlsI GCNGC 2 cut(s) 162, 368
Bme1390I CCNGG 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 34, 82, 435
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 85, 161, 430
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 4 cut(s) 73, 352, 426, 525
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 3 cut(s) 85, 161, 430
BseXI GCAGC 2 cut(s) 172, 378
BseYI CCCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 479
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 27, 200, 232, 321
BspCNI CTCAG 1 cut(s) 457
BspEI TCCGGA 1 cut(s) 343
BspPI GGATC 4 cut(s) 35, 208, 227, 329
BsrI ACTGG 3 cut(s) 85, 161, 430
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 4 cut(s) 27, 200, 232, 321
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 4 cut(s) 73, 352, 426, 525
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 4 cut(s) 30, 203, 235, 324
BstMBI GATC 4 cut(s) 27, 200, 232, 321
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 172, 378
BstX2I RGATCY 2 cut(s) 200, 232
BstYI RGATCY 2 cut(s) 200, 232
BtsCI GGATG 4 cut(s) 73, 352, 426, 525
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 387
CfoI GCGC 1 cut(s) 411
CviJI RGCY 4 cut(s) 163, 328, 441, 471
CviKI_1 RGCY 4 cut(s) 163, 328, 441, 471
DdeI CTNAG 1 cut(s) 465
DpnI GATC 4 cut(s) 29, 202, 234, 323
DpnII GATC 4 cut(s) 27, 200, 232, 321
Eco88I CYCGRG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 22
FaiI YATR 7 cut(s) 124, 214, 251, 352, 354, 362, 364
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 362, 394
FauNDI CATATG 1 cut(s) 362
Fnu4HI GCNGC 2 cut(s) 161, 367
FokI GGATG 4 cut(s) 60, 359, 413, 512
Fsp4HI GCNGC 2 cut(s) 161, 367
FspBI CTAG 2 cut(s) 164, 230
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 161, 367
GsaI CCCAGC 1 cut(s) 396
HapII CCGG 1 cut(s) 344
HhaI GCGC 1 cut(s) 411
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 4 cut(s) 50, 224, 484, 494
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 154, 476
Hpy188I TCNGA 2 cut(s) 109, 466
Hpy188III TCNNGA 3 cut(s) 230, 344, 481
Hpy8I GTNNAC 2 cut(s) 154, 476
HpyAV CCTTC 6 cut(s) 104, 134, 246, 350, 388, 515
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 3 cut(s) 57, 260, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 1 cut(s) 465
HspAI GCGC 1 cut(s) 409
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 27, 200, 232, 321
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 172, 378
LweI GCATC 3 cut(s) 34, 82, 435
MaeI CTAG 2 cut(s) 164, 230
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 29, 202, 234, 323
MboI GATC 4 cut(s) 27, 200, 232, 321
MboII GAAGA 3 cut(s) 26, 96, 330
MflI RGATCY 2 cut(s) 200, 232
MluCI AATT 5 cut(s) 84, 182, 195, 270, 459
MlyI GAGTC 2 cut(s) 44, 488
MnlI CCTC 3 cut(s) 4, 301, 460
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 87, 218
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeI CATATG 1 cut(s) 362
NdeII GATC 4 cut(s) 27, 200, 232, 321
NsbI TGCGCA 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 224, 484
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 2 cut(s) 162, 368
PleI GAGTC 2 cut(s) 44, 488
PpsI GAGTC 2 cut(s) 44, 488
PshBI ATTAAT 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 1 cut(s) 22
PsuI RGATCY 2 cut(s) 200, 232
SaqAI TTAA 2 cut(s) 87, 218
SatI GCNGC 2 cut(s) 161, 367
Sau3AI GATC 4 cut(s) 27, 200, 232, 321
SchI GAGTC 2 cut(s) 44, 488
ScrFI CCNGG 1 cut(s) 24
SetI ASST 4 cut(s) 25, 133, 165, 443
SfaNI GCATC 3 cut(s) 34, 82, 435
Sse9I AATT 5 cut(s) 84, 182, 195, 270, 459
SspMI CTAG 2 cut(s) 164, 230
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 1 cut(s) 381
TasI AATT 5 cut(s) 84, 182, 195, 270, 459
TfiI GAWTC 2 cut(s) 224, 484
Tru1I TTAA 2 cut(s) 87, 218
Tru9I TTAA 2 cut(s) 87, 218
TscAI CASTG 1 cut(s) 394
TseI GCWGC 2 cut(s) 160, 366
TspDTI ATGAA 3 cut(s) 17, 369, 497
TspRI CASTG 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 197
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 3 cut(s) 182, 270, 459
XbaI TCTAGA 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 164, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.