RchiOBHm_Chr4g0401691

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
19897319 .. 19901403
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGATGAGCACGGTGGAAGTTAATCTTCCTGAGGATGGAATAGGTGGTCTTGTGTGTCTTAAGTTCTGGGCATCAGATTTGCAGAACAAAAATTTCAACTTGTCCACCATTGTGTGTGAACCTCACAGATGTGCCAAGGGAGGGGGACTTGCTTTCCTTAAAGGGAACTCACCTTCCTTTCAACAACAAAGTATAGCAGATGGAAAATCACCACAAGCTTTGCTTGCCTATATAAATGCCGATCATGAGTACATCCTCTTTGGTCCATACGACAACGATGCACGTGAACTTAGTATGACCAGGGGGAAGGATTGTGTTGCCGTTGACGAAATAGCGCAATATGGATATGCATCTATTTATGGGGAGCTACCGCAATTTGAGATGAAGAGAGACCAGACCTTGTTAGCCCCATATGCTCCATCACAAAGGCCTTGGGAGACCATTTTTAGTGGGTCATCACATAATCTTCTACCCCTACCTAAATTGTGTTTAGAGTTTATGGAATCGCTGCTAGAAAGGAGGACTACCACAGTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
WD40

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

4.98

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AcsI RAATTY 1 cut(s) 91
AcvI CACGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 35, 141
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 97, 182
AjnI CCWGG 1 cut(s) 299
AleI CACNNNNGTG 2 cut(s) 110, 129
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 218, 367
AluI AGCT 2 cut(s) 218, 367
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 384, 431
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 162, 201
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 30
BbrPI CACGTG 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 29, 194, 427
BceAI ACGGC 1 cut(s) 305
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 384, 431
BfaI CTAG 1 cut(s) 512
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 80, 268, 359
BsaAI YACGTR 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 349
BsaI GGTCTC 2 cut(s) 384, 431
BsaJI CCNNGG 3 cut(s) 135, 300, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 141
Bse21I CCTNAGG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 349
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 135, 300, 431
BseGI GGATG 2 cut(s) 40, 252
BseJI GATNNNNATC 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 35, 141
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 495
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 35, 141
BsmAI GTCTC 2 cut(s) 384, 431
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 430
Bso31I GGTCTC 2 cut(s) 384, 431
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 59
BspTNI GGTCTC 2 cut(s) 384, 431
BssECI CCNNGG 3 cut(s) 135, 300, 431
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 2 cut(s) 135, 431
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 13, 532
Bst6I CTCTTC 1 cut(s) 380
BstAFI CTTAAG 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 30, 290
BstF5I GGATG 2 cut(s) 40, 252
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 384, 431
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 224, 413
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 40, 252
Cac8I GCNNGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 218, 367, 407, 430
CviKI_1 RGCY 4 cut(s) 218, 367, 407, 430
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 30, 290
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 135, 431
Eco147I AGGCCT 1 cut(s) 430
Eco31I GGTCTC 2 cut(s) 384, 431
Eco47I GGWCC 1 cut(s) 263
Eco72I CACGTG 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 2 cut(s) 135, 431
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 135, 431
FaeI CATG 1 cut(s) 248
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 207, 239
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 244
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 2 cut(s) 47, 239
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 509
HaeIII GGCC 1 cut(s) 430
HhaI GCGC 1 cut(s) 337
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 1 cut(s) 503
HphI GGTGA 2 cut(s) 162, 201
Hpy166II GTNNAC 4 cut(s) 105, 119, 287, 325
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 29, 245
Hpy8I GTNNAC 4 cut(s) 105, 119, 287, 325
HpyAV CCTTC 2 cut(s) 183, 301
HpyCH4III ACNGT 2 cut(s) 13, 532
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 82, 281, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 413
HpyF3I CTNAG 2 cut(s) 30, 290
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 364, 421
LpnPI CCDG 5 cut(s) 42, 52, 286, 313, 407
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 3 cut(s) 80, 268, 359
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 283
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 17, 397, 458
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 91, 374, 482
MnlI CCTC 5 cut(s) 25, 132, 134, 266, 513
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 3 cut(s) 21, 60, 159
MslI CAYNNNNRTG 2 cut(s) 110, 129
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 301
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 224, 413
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 352
OliI CACNNNNGTG 2 cut(s) 110, 129
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 430
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 510
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 299
PspCI CACGTG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 299
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 110, 129
SaqAI TTAA 3 cut(s) 21, 60, 159
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 11
SetI ASST 8 cut(s) 46, 124, 175, 220, 286, 369, 401, 481
SfaNI GCATC 3 cut(s) 80, 268, 359
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 110, 129
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 91, 374, 482
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 512
StuI AGGCCT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 135, 431
TaaI ACNGT 2 cut(s) 13, 532
TaiI ACGT 1 cut(s) 286
TasI AATT 3 cut(s) 91, 374, 482
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 3 cut(s) 21, 60, 159
Tru9I TTAA 3 cut(s) 21, 60, 159
TseI GCWGC 1 cut(s) 508
TspDTI ATGAA 1 cut(s) 398
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 91
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.