RchiOBHm_Chr4g0403211
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
22240181 .. 22240477
297 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 180 bp
ATGGTTGGACATGTTGCAGATTTCGATATTGCAAAAGTTTTAGCAGAAAACCAGGACAACACACAAACCAGAACTCTGGGTACAATTGGGTATGTTGCACCAGAGTACGGTTTGGAAGGAGGAGTGTCTGCCAGAGGTGATGTTTATAGCTTTGGAATCATGATGTTGGAGATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.37

Weight (kDa)

4.28

Isoelectric Point (pI)

8.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 59 3e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 58 1.9e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 82, 107
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 10
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 110
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 76
CciI TCATGA 1 cut(s) 159
Csp6I GTAC 2 cut(s) 81, 106
CviAII CATG 2 cut(s) 11, 160
CviJI RGCY 1 cut(s) 150
CviKI_1 RGCY 1 cut(s) 150
CviQI GTAC 2 cut(s) 81, 106
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 14, 163
FaiI YATR 4 cut(s) 12, 93, 147, 161
FatI CATG 2 cut(s) 10, 159
Hin1II CATG 2 cut(s) 14, 163
HinfI GANTC 1 cut(s) 156
HphI GGTGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 17, 32, 98
Hsp92II CATG 2 cut(s) 14, 163
LpnPI CCDG 6 cut(s) 38, 62, 65, 82, 114, 145
MfeI CAATTG 1 cut(s) 84
MluCI AATT 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 113, 128
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 53
NlaIII CATG 2 cut(s) 14, 163
NspI RCATGY 1 cut(s) 14
PagI TCATGA 1 cut(s) 159
PciI ACATGT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 156
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
RsaI GTAC 2 cut(s) 82, 107
RsaNI GTAC 2 cut(s) 81, 106
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 139, 152
SgeI CNNG 8 cut(s) 23, 64, 65, 81, 89, 113, 144, 172
Sse9I AATT 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 156
XceI RCATGY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.