RchiOBHm_Chr4g0404631

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
24454716 .. 24455189
474 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAAGAAAGAAAAGAAAACTCGTTTCCCATCAAAAGTAAAGCTCGATTGCAGAACACTCTCTCTCTCCCTCCTCTCTTTCACAGAGTACCCCAGTCTGAATCGTAGAGAAGCCAAAAGGAGAAGAATCACGATGAACCCACAAGTGGATAAGCAGGTGAGGAGGACAAGTATAGTGGCTACTATTACTGCTTCCTATTCTCTCTTAACCGCTGATTATGGCTCTGAGCCCAATGTTCTTGACCCTATTAAGGGGGCAATACAGCCCACAGAAAGCTATGTCAAATACTTCATCTTTGGATCAAAGACTCAACCTCCATTAAGCGAAGTGAAGAAGCTGGGCTCTAACAGCGCAAAGGAAAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

10.04

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 307
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 3 cut(s) 145, 250, 251
AluBI AGCT 3 cut(s) 43, 276, 337
AluI AGCT 3 cut(s) 43, 276, 337
AlwI GGATC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 169
BanII GRGCYC 2 cut(s) 231, 344
BccI CCATC 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 298, 328
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 250, 251
Bse1I ACTGG 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 145, 250, 251
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 62, 175
BseYI CCCAGC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 145, 250, 251
Bsp1286I GDGCHC 2 cut(s) 231, 344
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 93
BssMI GATC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 348
BveI ACCTGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviJI RGCY 9 cut(s) 43, 113, 179, 222, 229, 265, 276, 337, 342
CviKI_1 RGCY 9 cut(s) 43, 113, 179, 222, 229, 265, 276, 337, 342
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 231, 344
EcoT38I GRGCYC 2 cut(s) 231, 344
FaiI YATR 3 cut(s) 173, 219, 279
FriOI GRGCYC 2 cut(s) 231, 344
GlaI GCGC 1 cut(s) 352
GsaI CCCAGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 353
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 3 cut(s) 100, 126, 307
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 99, 226
Hpy188III TCNNGA 2 cut(s) 130, 239
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 1 cut(s) 225
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 3 cut(s) 106, 140, 323
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 3 cut(s) 16, 135, 343
MhlI GDGCHC 2 cut(s) 231, 344
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 80, 83, 153, 156, 324
MseI TTAA 3 cut(s) 206, 249, 320
MspA1I CMGCKG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 100, 126
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 337
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 206, 249, 320
Sau3AI GATC 1 cut(s) 299
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 2 cut(s) 231, 344
SetI ASST 5 cut(s) 45, 159, 278, 316, 339
SgeI CNNG 9 cut(s) 33, 56, 105, 142, 155, 167, 180, 251, 350
SsiI CCGC 1 cut(s) 210
TaqI TCGA 1 cut(s) 45
TfiI GAWTC 2 cut(s) 100, 126
Tru1I TTAA 3 cut(s) 206, 249, 320
Tru9I TTAA 3 cut(s) 206, 249, 320
TspDTI ATGAA 3 cut(s) 17, 149, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.