RchiOBHm_Chr4g0406191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
27286548 .. 27287552
1005 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGTCACTTTTCGATCGATCAATGAGTTGCACATGGAATTTCTATGTGTCTCAGAATTCCTGATTGAGGTAGCTGATGATTTTTCAAAAGTCTTGGCGCTCTTCGTGCTGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCACGTTTGTCAGAGTACATGGAGCTTGTGCCCCTACAGTGCTGGTGAGCATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.65

Weight (kDa)

4.84

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
AcsI RAATTY 2 cut(s) 38, 56
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 2 cut(s) 87, 136
AluBI AGCT 2 cut(s) 74, 170
AluI AGCT 2 cut(s) 74, 170
Alw26I GTCTC 1 cut(s) 55
ApoI RAATTY 2 cut(s) 38, 56
AspLEI GCGC 2 cut(s) 100, 147
AsuHPI GGTGA 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 55
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 17
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 14, 18
BspCNI CTCAG 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 107
BssMI GATC 2 cut(s) 14, 18
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 100, 147
BstKTI GATC 2 cut(s) 17, 21
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 14, 18
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 17
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 189
CfoI GCGC 2 cut(s) 100, 147
ClaI ATCGAT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 34, 164
CviJI RGCY 2 cut(s) 74, 170
CviKI_1 RGCY 2 cut(s) 74, 170
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 16, 20
DpnII GATC 2 cut(s) 14, 18
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 56
FaeI CATG 2 cut(s) 37, 167
FaiI YATR 4 cut(s) 35, 46, 140, 165
FatI CATG 2 cut(s) 33, 163
FokI GGATG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 2 cut(s) 99, 146
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 101
HhaI GCGC 2 cut(s) 100, 147
Hin1II CATG 2 cut(s) 37, 167
Hin6I GCGC 2 cut(s) 98, 145
HinP1I GCGC 2 cut(s) 98, 145
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 55, 158
Hpy188III TCNNGA 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 37, 167
HspAI GCGC 2 cut(s) 98, 145
Kzo9I GATC 2 cut(s) 14, 18
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 3 cut(s) 74, 95, 173
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 16, 20
MboI GATC 2 cut(s) 14, 18
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 3 cut(s) 38, 56, 130
MnlI CCTC 2 cut(s) 61, 106
MseI TTAA 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 2 cut(s) 14, 18
NlaIII CATG 2 cut(s) 37, 167
NmuCI GTSAC 1 cut(s) 4
NsbI TGCGCA 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 195
Ple19I CGATCG 1 cut(s) 17
PvuI CGATCG 1 cut(s) 17
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 202
Sau3AI GATC 2 cut(s) 14, 18
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 72, 76, 152, 172
SfcI CTRYAG 1 cut(s) 180
SgeI CNNG 9 cut(s) 46, 73, 106, 118, 122, 160, 176, 183, 200
Sse9I AATT 3 cut(s) 38, 56, 130
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 13, 17
TasI AATT 3 cut(s) 38, 56, 130
TatI WGTACW 1 cut(s) 160
Tru1I TTAA 1 cut(s) 202
Tru9I TTAA 1 cut(s) 202
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 2 cut(s) 38, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.