RchiOBHm_Chr4g0406821

Uncharacterized conserved protein (DUF2054)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
28753590 .. 28758381
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGCATTAATGTTCTTGTTGGAAGGTGAGATTCAAAATTATATCTATATTTTTTATATCTATTTAAGTATGAACTTATCCATGCAAAAGTTTTCAAACTGTGCTGACTCGCAAGAGTTTCTTATGGTGTATCTGACAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAATCAAAGGGGCAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATGTAATATCCAGAGATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTCGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATTCCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.7

Weight (kDa)

6.01

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 35, 96, 325
AjnI CCWGG 2 cut(s) 264, 328
AluBI AGCT 2 cut(s) 201, 249
AluI AGCT 2 cut(s) 201, 249
AlwI GGATC 1 cut(s) 286
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AseI ATTAAT 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 38, 157
BalI TGGCCA 1 cut(s) 269
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 266, 330
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 266, 330
BmrFI CCNGG 2 cut(s) 266, 330
BpmI CTGGAG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 266, 330
BseNI ACTGG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 269
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 2 cut(s) 278, 283
BspANI GGCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 270
BssMI GATC 2 cut(s) 278, 283
Bst2UI CCWGG 2 cut(s) 266, 330
Bst4CI ACNGT 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 281, 286
BstMBI GATC 2 cut(s) 278, 283
BstNI CCWGG 2 cut(s) 266, 330
BstNSI RCATGY 2 cut(s) 228, 339
BstSCI CCNGG 2 cut(s) 264, 328
BstV1I GCAGC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 223
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 337
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 208
CviAII CATG 5 cut(s) 82, 185, 225, 336, 361
CviJI RGCY 4 cut(s) 201, 249, 269, 400
CviKI_1 RGCY 4 cut(s) 201, 249, 269, 400
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 280, 285
DpnII GATC 2 cut(s) 278, 283
EaeI YGGCCR 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 264, 328
FaeI CATG 5 cut(s) 85, 188, 228, 339, 364
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 5 cut(s) 81, 184, 224, 335, 360
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 269
HgaI GACGC 1 cut(s) 317
Hin1II CATG 5 cut(s) 85, 188, 228, 339, 364
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 4 cut(s) 31, 107, 148, 325
HphI GGTGA 2 cut(s) 38, 157
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 135, 283
Hpy188III TCNNGA 2 cut(s) 235, 314
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 4 cut(s) 85, 167, 252, 413
Hsp92II CATG 5 cut(s) 85, 188, 228, 339, 364
Kzo9I GATC 2 cut(s) 278, 283
LmnI GCTCC 2 cut(s) 316, 332
Lsp1109I GCAGC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 280, 285
MboI GATC 2 cut(s) 278, 283
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 390
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 3 cut(s) 8, 65, 212
Msp20I TGGCCA 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 266, 330
MvaI CCWGG 2 cut(s) 266, 330
NdeII GATC 2 cut(s) 278, 283
NlaIII CATG 5 cut(s) 85, 188, 228, 339, 364
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 2 cut(s) 228, 339
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 224
PfeI GAWTC 3 cut(s) 31, 148, 325
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PscI ACATGT 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 264, 328
PspGI CCWGG 2 cut(s) 264, 328
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 3 cut(s) 8, 65, 212
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 278, 283
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 266, 330
SetI ASST 5 cut(s) 28, 147, 203, 251, 292
SphI GCATGC 1 cut(s) 339
Sse9I AATT 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 264, 328
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 37
TfiI GAWTC 3 cut(s) 31, 148, 325
Tru1I TTAA 3 cut(s) 8, 65, 212
Tru9I TTAA 3 cut(s) 8, 65, 212
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 223
VspI ATTAAT 1 cut(s) 8
XceI RCATGY 2 cut(s) 228, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.