RchiOBHm_Chr4g0409011

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
32071256 .. 32075413
4158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1044 bp
ATGTCGTCTTCAGACGAGGAGGGATCAGGGGAGGAGTACCTGTTCAAGATCGTCATCATTGGAGACTCGGCGGTGGGCAAATCGAACTTGCTGTCTCGCTACGCGCGGAACGAGTTCAGTGCGCACTCAAAGGCCACAATAGGCGTGGAGTTTCAGACCCAGAGCATGGAAATCGACGGCAAAGAAGTCAAGGCTCAGATTTGGGACACTGCCGGCCAAGAACGCTTCAGGGCTGTAACCTCTGCCTACTACCGCGGCGCCGTCGGAGCTCTCATTGTCTATGATATCACCCGCCGTACCACGTTCGACAGTGTCGGTCGCTGGCTCGATGAGCTCAAGATTCTGTTTTGTCTTTTTATGTATGTGGGTTTGGTGGGTTTTGGCCTAACTCGGTATGAATACGACTTTAGATCTAAGCTTATGATGAGAAATTCAACTTACGCCCCAATTGACCCTCCAGATGAAAGCCACGTTCTAGTATGGTGGGTATGGTGTCCGACTGAAAATCAAGAAGGCAGGGAAGGGAGTTTTCTAGAGTTGGAATCAACTATGGTGGTTATGGTATCTGACTTCAATACAAGAAGGAAAGAGAGTTTTCTAGAGTTTCCATCAACTAGTGTAAGGTGGCTCTTTAACATCCTTGGTTTTCAAAATTCATCCTTATTCTGTCAGTCTGTATTTCCTGCTCGCACTGTTTTCTTCTTAAGGATTAAGTTTAGTTCTCATTCTGATACTACAATGGCGAGGATGCTAGTGGGGAACAAATGTGATTTGGAGAATATTAGGGATGTGAGTGTTGAAGAAGGTAAAAGCCTTGCTGAAGCCGAAGGGTTGTTCTTCATGGAGACATCTGCGCTAGACTCAACCAATGTTAATAAGGCTTTTGAGCTTGTTATTCGAGAAATATATAGCAATGTGAGTCGGAAGGTCTTGAATTCAGATACTTACAAAGCAGAGTTATCTGTGAACAGAGTAACCCTGGTTAATAATGGGGCAGATGGATCAAAGAAAGCTCAGGGCTACTTTTCTTGCTGTTCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

347

Amino Acids

39.3

Weight (kDa)

5.29

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 112 3.4e-09 ADP-ribosylation factor family
Ras PF00071 16 - 117 3.5e-39 Ras family
Roc PF08477 16 - 113 2.5e-29 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 239 - 303 5.3e-16 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 3 cut(s) 104, 106, 255
AciI CCGC 5 cut(s) 71, 106, 253, 255, 292
AclWI GGATC 2 cut(s) 31, 1009
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 3 cut(s) 430, 652, 934
AcuI CTGAAG 2 cut(s) 211, 840
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 38, 298
AfiI CCNNNNNNNGG 1 cut(s) 166
AflII CTTAAG 1 cut(s) 703
AgsI TTSAA 6 cut(s) 46, 435, 574, 650, 800, 934
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 978
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 5 cut(s) 269, 334, 418, 889, 1013
AluI AGCT 5 cut(s) 269, 334, 418, 889, 1013
Alw21I GWGCWC 2 cut(s) 271, 336
Alw26I GTCTC 3 cut(s) 57, 99, 839
AlwI GGATC 2 cut(s) 31, 1009
AoxI GGCC 3 cut(s) 132, 214, 382
ApoI RAATTY 3 cut(s) 430, 652, 934
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 4 cut(s) 106, 124, 260, 856
AsuHPI GGTGA 1 cut(s) 280
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 2 cut(s) 271, 336
Bbv12I GWGCWC 2 cut(s) 271, 336
BccI CCATC 2 cut(s) 616, 992
BceAI ACGGC 3 cut(s) 193, 245, 279
BcgI CGANNNNNNTGC 4 cut(s) 101, 135, 154, 188
BciT130I CCWGG 1 cut(s) 980
BcoDI GTCTC 3 cut(s) 57, 99, 839
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 6 cut(s) 476, 533, 599, 615, 752, 857
BfoI RGCGCY 1 cut(s) 261
BfrI CTTAAG 1 cut(s) 703
BglII AGATCT 1 cut(s) 410
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 980
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 980
BmsI GCATC 1 cut(s) 738
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 253, 640, 978
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 919
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 3 cut(s) 253, 640, 978
BseGI GGATG 4 cut(s) 636, 656, 753, 793
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 919
BseMII CTCAG 2 cut(s) 209, 1028
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 2 cut(s) 32, 47
Bsh1236I CGCG 3 cut(s) 104, 106, 255
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 134, 216, 384
BshNI GGYRCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 271, 336
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 3 cut(s) 57, 99, 839
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 134, 216, 384
Bsp1286I GDGCHC 2 cut(s) 271, 336
Bsp143I GATC 4 cut(s) 23, 48, 410, 1001
BspACI CCGC 5 cut(s) 71, 106, 253, 255, 292
BspANI GGCC 3 cut(s) 134, 216, 384
BspCNI CTCAG 2 cut(s) 208, 1027
BspFNI CGCG 3 cut(s) 104, 106, 255
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 31, 1009
BspT107I GGYRCC 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 1038
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 253, 640, 978
BssMI GATC 4 cut(s) 23, 48, 410, 1001
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 2 cut(s) 311, 694
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 214, 323, 688
BstDEI CTNAG 3 cut(s) 195, 414, 1014
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 4 cut(s) 636, 656, 753, 793
BstFNI CGCG 3 cut(s) 104, 106, 255
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 4 cut(s) 106, 124, 260, 856
BstKTI GATC 4 cut(s) 26, 51, 413, 1004
BstMAI GTCTC 3 cut(s) 57, 99, 839
BstMBI GATC 4 cut(s) 23, 48, 410, 1001
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 222, 266, 331
BstNI CCWGG 1 cut(s) 980
BstSCI CCNGG 1 cut(s) 978
BstUI CGCG 3 cut(s) 104, 106, 255
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 3 cut(s) 134, 216, 384
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 4 cut(s) 636, 656, 753, 793
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 4 cut(s) 124, 207, 316, 690
Cac8I GCNNGC 3 cut(s) 214, 323, 688
CfoI GCGC 4 cut(s) 106, 124, 260, 856
Cfr10I RCCGGY 1 cut(s) 212
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 2 cut(s) 37, 297
CspCI CAANNNNNGTGG 4 cut(s) 126, 161, 534, 569
CviAII CATG 2 cut(s) 166, 841
CviQI GTAC 2 cut(s) 37, 297
DdeI CTNAG 3 cut(s) 195, 414, 1014
DinI GGCGCC 1 cut(s) 259
DpnI GATC 4 cut(s) 25, 50, 412, 1003
DpnII GATC 4 cut(s) 23, 48, 410, 1001
EaeI YGGCCR 1 cut(s) 214
Ecl136II GAGCTC 2 cut(s) 269, 334
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 2 cut(s) 271, 336
Eco32I GATATC 1 cut(s) 286
Eco53kI GAGCTC 2 cut(s) 269, 334
Eco57I CTGAAG 2 cut(s) 211, 840
EcoICRI GAGCTC 2 cut(s) 269, 334
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 1 cut(s) 978
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 271, 336
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 2 cut(s) 169, 844
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 165, 840
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 4 cut(s) 623, 643, 760, 800
FriOI GRGCYC 2 cut(s) 271, 336
Fsp4HI GCNGC 1 cut(s) 256
FspAI RTGCGCAY 1 cut(s) 123
FspBI CTAG 6 cut(s) 476, 533, 599, 615, 752, 857
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 4 cut(s) 105, 123, 259, 855
GluI GCNGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 3 cut(s) 134, 216, 384
HapII CCGG 1 cut(s) 213
HhaI GCGC 4 cut(s) 106, 124, 260, 856
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 169, 844
Hin6I GCGC 4 cut(s) 104, 122, 258, 854
HinP1I GCGC 4 cut(s) 104, 122, 258, 854
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 65, 340, 542, 860, 919
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 9 cut(s) 13, 156, 198, 266, 498, 568, 730, 924, 940
Hpy188III TCNNGA 8 cut(s) 46, 337, 458, 509, 533, 599, 899, 931
Hpy8I GTNNAC 1 cut(s) 967
Hpy99I CGWCG 2 cut(s) 179, 266
HpyAV CCTTC 6 cut(s) 506, 515, 576, 797, 821, 919
HpyCH4III ACNGT 2 cut(s) 311, 694
HpyCH4IV ACGT 2 cut(s) 302, 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 266, 331
HpyF3I CTNAG 3 cut(s) 195, 414, 1014
HpySE526I ACGT 2 cut(s) 302, 471
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 169, 844
HspAI GCGC 4 cut(s) 104, 122, 258, 854
KasI GGCGCC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 4 cut(s) 23, 48, 410, 1001
LmnI GCTCC 1 cut(s) 266
LweI GCATC 1 cut(s) 738
MaeI CTAG 6 cut(s) 476, 533, 599, 615, 752, 857
MaeII ACGT 2 cut(s) 302, 471
MaeIII GTNAC 2 cut(s) 235, 973
MalI GATC 4 cut(s) 25, 50, 412, 1003
MboI GATC 4 cut(s) 23, 48, 410, 1001
MboII GAAGA 3 cut(s) 691, 812, 829
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 271, 336
MluCI AATT 4 cut(s) 430, 447, 652, 934
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 3 cut(s) 59, 854, 928
MmeI TCCRAC 4 cut(s) 244, 519, 521, 902
MnlI CCTC 6 cut(s) 10, 13, 25, 250, 465, 738
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 6 cut(s) 633, 704, 711, 873, 984, 1042
MspA1I CMGCKG 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 703
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 980
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 980
MvnI CGCG 3 cut(s) 104, 106, 255
MwoI GCNNNNNNNGC 3 cut(s) 222, 266, 331
NaeI GCCGGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 258
NdeII GATC 4 cut(s) 23, 48, 410, 1001
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 2 cut(s) 169, 844
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 340, 542
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 1 cut(s) 257
PleI GAGTC 3 cut(s) 59, 854, 927
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 3 cut(s) 59, 854, 927
Psp124BI GAGCTC 2 cut(s) 271, 336
Psp6I CCWGG 1 cut(s) 978
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 2 cut(s) 38, 298
RsaNI GTAC 2 cut(s) 37, 297
SacI GAGCTC 2 cut(s) 271, 336
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 6 cut(s) 633, 704, 711, 873, 984, 1042
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 4 cut(s) 23, 48, 410, 1001
SchI GAGTC 3 cut(s) 59, 854, 928
ScrFI CCNGG 1 cut(s) 980
SduI GDGCHC 2 cut(s) 271, 336
SfaNI GCATC 1 cut(s) 738
SfoI GGCGCC 1 cut(s) 259
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 335, 703
SmoI CTYRAG 2 cut(s) 335, 703
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 4 cut(s) 430, 447, 652, 934
SsiI CCGC 5 cut(s) 71, 106, 253, 255, 292
SspDI GGCGCC 1 cut(s) 257
SspI AATATT 1 cut(s) 781
SspMI CTAG 6 cut(s) 476, 533, 599, 615, 752, 857
SstI GAGCTC 2 cut(s) 271, 336
StyD4I CCNGG 1 cut(s) 978
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 311, 694
TaiI ACGT 2 cut(s) 305, 474
TaqI TCGA 5 cut(s) 83, 174, 306, 327, 898
TaqII GACCGA 1 cut(s) 305
TasI AATT 4 cut(s) 430, 447, 652, 934
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 2 cut(s) 340, 542
Tru1I TTAA 6 cut(s) 633, 704, 711, 873, 984, 1042
Tru9I TTAA 6 cut(s) 633, 704, 711, 873, 984, 1042
TscAI CASTG 4 cut(s) 124, 214, 316, 697
TspDTI ATGAA 4 cut(s) 411, 477, 645, 829
TspRI CASTG 4 cut(s) 124, 214, 316, 697
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 703
XapI RAATTY 3 cut(s) 430, 652, 934
XbaI TCTAGA 2 cut(s) 532, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 6 cut(s) 476, 533, 599, 615, 752, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.