Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33942086 .. 33943730

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACAGCCGACATCTTTTGGTGACTGCAGGCGATAATGGCTCTGTGCATTTGTGGGACACAACCGGTCGTAGCCCAAAGGTTTGCATTAGTTTAATGAATCTCTCTGCATATTCAAAGCATTCTGCACCAACTGCTGGTATCAATTTCTCACCGTCAAATGACAAGATGTTTGCTAGTGTTGGGCATGATAAAGATTGTTGTTCTTATGAGGCACAGGGTCTGGGAGACATTCATCTTGCATCCTCTATGAGGCACCTTTTTCTGCATTGGCATTTAGAGATGATGGTTGGGTACTGGCAGCTGGAACAAGTAGTGGTCATGTTGTGTTTTTTGATATCTGGTAAACCAGAGCCTTTTACTGTTGTTCGTGCTCATAATACTTCAGAGGCTGTTACAAGTTTATGCTGGCAAAGGTCAAAACCTGTCATTGTACATGTAAATGAAAGCAGTTCTTCTGTTGAGACTGCGCTTGTAGGGGATGCTGTTGAAGATTCAATCCTTATGCCTGATCCACTTCCTTCTGTGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000242 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0000922 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005814 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0005929 GO:0007049 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0009553 GO:0009555 GO:0009987 GO:0010564 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032506 GO:0032886 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0036064 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044380 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044450 GO:0044463 GO:0044464 GO:0045787 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051179 GO:0051301 GO:0051302 GO:0051493 GO:0051641 GO:0051726 GO:0051781 GO:0060236 GO:0061640 GO:0065007 GO:0070507 GO:0070727 GO:0071539 GO:0071840 GO:0072698 GO:0090068 GO:0090224 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120038 GO:1902410 GO:1903047 GO:1905508 GO:2000694

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

178

Amino Acids

19.47

Weight (kDa)

5.72

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	137
AclWI	GGATC	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	296, 435
AfiI	CCNNNNNNNGG	2 cut(s)	137, 252
AflIII	ACRYGT	1 cut(s)	436
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	117, 491, 498
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	222, 458
AlwI	GGATC	1 cut(s)	506
AlwNI	CAGNNNCTG	2 cut(s)	223, 392
ApeKI	GCWGC	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AsiGI	ACCGGT	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	34, 144
BanI	GGYRCC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	222, 458
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	251, 472
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 252
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	242, 487
BseLI	CCNNNNNNNGG	2 cut(s)	137, 252
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	137, 252
BsmAI	GTCTC	2 cut(s)	222, 458
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	156, 364
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	31, 410
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	242, 487
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	2 cut(s)	222, 458
BstMBI	GATC	1 cut(s)	511
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 134
BstNSI	RCATGY	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	242, 487
Cac8I	GCNNGC	2 cut(s)	31, 410
CaiI	CAGNNNCTG	2 cut(s)	223, 392
CciI	TCATGA	1 cut(s)	533
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	295, 434
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	4 cut(s)	188, 322, 437, 534
CviJI	RGCY	6 cut(s)	9, 42, 75, 304, 355, 392
CviKI_1	RGCY	6 cut(s)	9, 42, 75, 304, 355, 392
CviQI	GTAC	2 cut(s)	295, 434
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	339
FaeI	CATG	4 cut(s)	191, 325, 440, 537
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	187, 321, 436, 533
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	229, 494
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	1 cut(s)	302
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	4 cut(s)	191, 325, 440, 537
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	2 cut(s)	100, 494
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	34, 144
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	534
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	2 cut(s)	156, 364
HpyCH4V	TGCA	7 cut(s)	29, 49, 87, 110, 128, 242, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 134
Hsp92II	CATG	4 cut(s)	191, 325, 440, 537
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	251, 472
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	22, 394, 526
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	2 cut(s)	447, 503
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	205, 246, 256, 382
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	39, 134
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	4 cut(s)	191, 325, 440, 537
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	22, 526
NspI	RCATGY	1 cut(s)	440
PagI	TCATGA	1 cut(s)	533
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	100, 494
PflMI	CCANNNNNTGG	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	303
PscI	ACATGT	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	2 cut(s)	223, 392
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	296, 435
RsaNI	GTAC	2 cut(s)	295, 434
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	5 cut(s)	84, 261, 306, 419, 427
SfaNI	GCATC	2 cut(s)	251, 472
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	156, 364
TasI	AATT	1 cut(s)	145
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	2 cut(s)	100, 494
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	2 cut(s)	22, 526
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	2 cut(s)	22, 526
TspDTI	ATGAA	4 cut(s)	113, 224, 459, 522
Van91I	CCANNNNNTGG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.