Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35004412 .. 35005240

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCAGTGGATTAACACAGGCCATATTCCTTGCTTTGAAGATGGAGGTCATCATCGACCAAACCGGCATGTTGAGATTTCCAGGGTCATATTTCAAGAACTGGAAAGAATTTCCTGCAGGAAAGATACTTCACCCCAGGAAATACTCGTTATTCGCAAAATTCATCCCTGTCTGCTGTCTTTCAAGGCAGAGTTTACTGCATCTGTCCCCTTAACACGAATCAGGGACATTGCTCATCGGAATGATATCCCTCATGACCTTAAGGTGTACTTTGCATTGCATTTATTGCCTTATTTAATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

101

Amino Acids

11.91

Weight (kDa)

8.58

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	108, 159
AfaI	GTAC	1 cut(s)	269
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	38, 95, 184
AjnI	CCWGG	2 cut(s)	80, 135
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	108, 159
AsuHPI	GGTGA	1 cut(s)	123
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	82, 137
BfmI	CTRYAG	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	82, 137
BmrFI	CCNGG	2 cut(s)	82, 137
BmsI	GCATC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	81, 135
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	2 cut(s)	228, 275
BseBI	CCWGG	2 cut(s)	82, 137
BseDI	CCNNGG	2 cut(s)	81, 135
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	2 cut(s)	228, 275
BseNI	ACTGG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	191, 239
BsmFI	GGGAC	2 cut(s)	191, 239
BsnI	GGCC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	228, 275
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	81, 135
Bst2UI	CCWGG	2 cut(s)	82, 137
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	2 cut(s)	82, 137
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	80, 135
BstSFI	CTRYAG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	68, 254
CviJI	RGCY	1 cut(s)	21
CviKI_1	RGCY	1 cut(s)	21
CviQI	GTAC	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	80, 135
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	2 cut(s)	71, 257
FaiI	YATR	4 cut(s)	24, 69, 89, 255
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	191, 239
FatI	CATG	2 cut(s)	67, 253
FokI	GGATG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	2 cut(s)	71, 257
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	195, 268
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	95, 254
Hpy8I	GTNNAC	2 cut(s)	195, 268
HpyCH4V	TGCA	6 cut(s)	4, 117, 200, 275, 280, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	71, 257
LweI	GCATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	50
MluCI	AATT	2 cut(s)	108, 159
MnlI	CCTC	2 cut(s)	38, 261
MseI	TTAA	4 cut(s)	12, 212, 261, 296
MslI	CAYNNNNRTG	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	82, 137
MvaI	CCWGG	2 cut(s)	82, 137
MwoI	GCNNNNNNNGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	71, 257
NspI	RCATGY	1 cut(s)	71
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	80, 135
PspGI	CCWGG	2 cut(s)	80, 135
PstI	CTGCAG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	12, 212, 261, 296
SbfI	CCTGCAGG	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	82, 137
SdaI	CCTGCAGG	1 cut(s)	119
SetI	ASST	3 cut(s)	49, 261, 267
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse8387I	CCTGCAGG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	108, 159
StyD4I	CCNGG	2 cut(s)	80, 135
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	108, 159
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	4 cut(s)	12, 212, 261, 296
Tru9I	TTAA	4 cut(s)	12, 212, 261, 296
TspDTI	ATGAA	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	108, 159
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.