RchiOBHm_Chr4g0411321

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
35137827 .. 35139699
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGGCGAGCATGAGGAAGATGAAGCCGGGGTCACAAGGCGTTGAGGTTTCGGCTCAAGGATTGGGTTACATGGGCATGTCCGTCTTCTATGGCCCCCCAAAGCCCGAACCGGACATGATCCAACTCATCCACCACACCATCGACGCCGGCGTCACCTACCTTAATATCGCTGATGTTTACGGTCCCTTCACCAACGAACTTCTTCCGGGCAAGATAATCAAGCACTGTTGTTCTTTGCATGTAGCCACTGCTTTGAGCGGAGGGGTGAGAGACAAGGTTGAATTGGCCACCAAATTTGGTATCAGCTCTGCAGACAACAAAACGAAAATTCGAGGCGACGCGGCTTATGTCAGGTCTGCTTGTGAAGGAAGCCTGAAACGACTTGGTGTAGATTCTATTGATCTCTATTATCAGCATCGAATTGACACCCGTGTCCCATCGAAGTCACGGTTTGTGGGGGAGCTCAAGAAATTAGTTGAAGAGGGTAAGATAAAGGACATTGGTCTGTCTGAGGCGTTAGCTTCAACAATAAGAAGAGCCGATGTTGTTCATCCAATAACTGCTGTGCAGCTGGAGTGGTCCTTGTGGTCAAGAGATGTGGAGGAAGAAATAGTTCCTACTTGTCGTCCTCTAGCAAGTGGATTTTTTTCATTGGGGGCCAAGTTCATTGAAAGTCTTCCAAACAATGATTCCCGAAATGTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

235

Amino Acids

25.71

Weight (kDa)

8.22

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 32 - 209 1.3e-31 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 431
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 258, 341
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 293, 327
AcyI GRCGYC 2 cut(s) 144, 150
AgsI TTSAA 4 cut(s) 281, 479, 525, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AluBI AGCT 4 cut(s) 306, 463, 521, 571
AluI AGCT 4 cut(s) 306, 463, 521, 571
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 112
AoxI GGCC 3 cut(s) 91, 285, 657
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 2 cut(s) 293, 327
Asp700I GAANNNNTTC 3 cut(s) 201, 612, 675
AspS9I GGNCC 4 cut(s) 92, 182, 579, 657
AsuC2I CCSGG 2 cut(s) 27, 207
AsuHPI GGTGA 3 cut(s) 145, 181, 277
AvaII GGWCC 2 cut(s) 182, 579
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 76, 668
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 580
BccI CCATC 2 cut(s) 146, 445
BcnI CCSGG 2 cut(s) 27, 207
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 342, 569
BlsI GCNGC 2 cut(s) 343, 570
Bme1390I CCNGG 2 cut(s) 27, 207
Bme18I GGWCC 2 cut(s) 182, 579
BmgT120I GGNCC 4 cut(s) 92, 182, 579, 657
BmiI GGNNCC 3 cut(s) 94, 184, 658
BmrFI CCNGG 2 cut(s) 27, 207
BmsI GCATC 1 cut(s) 424
BoxI GACNNNNGTC 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 76, 668
BpmI CTGGAG 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 39, 449
BpuMI CCSGG 2 cut(s) 27, 207
BsaHI GRCGYC 2 cut(s) 144, 150
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 126, 550
BseMII CTCAG 1 cut(s) 501
BseXI GCAGC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 93, 287, 659
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 4 cut(s) 26, 110, 147, 206
BslFI GGGAC 2 cut(s) 168, 419
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 168, 419
BsnI GGCC 3 cut(s) 93, 287, 659
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 2 cut(s) 117, 400
BspACI CCGC 2 cut(s) 258, 341
BspANI GGCC 3 cut(s) 93, 287, 659
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 3 cut(s) 94, 184, 658
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 117, 400
BssNI GRCGYC 2 cut(s) 144, 150
Bst4CI ACNGT 3 cut(s) 182, 227, 450
Bst6I CTCTTC 2 cut(s) 474, 529
BstACI GRCGYC 2 cut(s) 144, 150
BstC8I GCNNGC 2 cut(s) 7, 148
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 126, 550
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 2 cut(s) 120, 403
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 117, 400
BstNSI RCATGY 2 cut(s) 79, 242
BstPAI GACNNNNGTC 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 25, 205
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 2 cut(s) 76, 668
BsuRI GGCC 3 cut(s) 93, 287, 659
BtsCI GGATG 2 cut(s) 126, 550
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 223, 246
Cac8I GCNNGC 2 cut(s) 7, 148
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 4 cut(s) 92, 182, 579, 657
CseI GACGC 3 cut(s) 139, 152, 347
CspCI CAANNNNNGTGG 4 cut(s) 277, 312, 579, 614
CviAII CATG 5 cut(s) 10, 70, 76, 115, 239
DdeI CTNAG 1 cut(s) 510
DpnI GATC 2 cut(s) 119, 402
DpnII GATC 2 cut(s) 117, 400
DrdI GACNNNNNNGTC 2 cut(s) 149, 431
DseDI GACNNNNNNGTC 2 cut(s) 149, 431
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 474, 529
EarI CTCTTC 2 cut(s) 474, 529
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 182, 579
Eco53kI GAGCTC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 5 cut(s) 13, 73, 79, 118, 242
FaiI YATR 7 cut(s) 11, 71, 77, 90, 116, 240, 348
FaqI GGGAC 2 cut(s) 168, 419
FatI CATG 5 cut(s) 9, 69, 75, 114, 238
Fnu4HI GCNGC 2 cut(s) 342, 569
FokI GGATG 2 cut(s) 113, 537
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 342, 569
FspBI CTAG 1 cut(s) 632
GluI GCNGC 2 cut(s) 342, 569
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 3 cut(s) 93, 287, 659
HapII CCGG 4 cut(s) 26, 110, 147, 206
HgaI GACGC 3 cut(s) 139, 152, 347
Hin1I GRCGYC 2 cut(s) 144, 150
Hin1II CATG 5 cut(s) 13, 73, 79, 118, 242
HinfI GANTC 2 cut(s) 392, 689
HpaII CCGG 4 cut(s) 26, 110, 147, 206
HphI GGTGA 3 cut(s) 145, 181, 277
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 3 cut(s) 466, 591, 693
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 2 cut(s) 146, 341
HpyAV CCTTC 2 cut(s) 196, 359
HpyCH4III ACNGT 3 cut(s) 182, 227, 450
HpyCH4V TGCA 3 cut(s) 238, 311, 568
HpyF3I CTNAG 1 cut(s) 510
Hsp92I GRCGYC 2 cut(s) 144, 150
Hsp92II CATG 5 cut(s) 13, 73, 79, 118, 242
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 117, 400
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 7 cut(s) 39, 123, 160, 219, 337, 386, 557
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 632
MaeIII GTNAC 4 cut(s) 30, 65, 151, 444
MalI GATC 2 cut(s) 119, 402
MbiI CCGCTC 1 cut(s) 258
MboI GATC 2 cut(s) 117, 400
MboII GAAGA 7 cut(s) 28, 76, 194, 491, 546, 617, 668
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 5 cut(s) 281, 293, 327, 420, 470
MluNI TGGCCA 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 8 cut(s) 6, 37, 254, 326, 475, 505, 595, 639
Mox20I TGGCCA 1 cut(s) 287
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 3 cut(s) 201, 612, 675
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 162, 706
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 4 cut(s) 26, 110, 147, 206
MspR9I CCNGG 2 cut(s) 27, 207
MvnI CGCG 1 cut(s) 341
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 27, 207
NdeII GATC 2 cut(s) 117, 400
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 13, 73, 79, 118, 242
NlaIV GGNNCC 3 cut(s) 94, 184, 658
NmuCI GTSAC 3 cut(s) 30, 151, 444
NspI RCATGY 2 cut(s) 79, 242
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 3 cut(s) 201, 612, 675
PfeI GAWTC 2 cut(s) 392, 689
PkrI GCNGC 2 cut(s) 343, 570
PshAI GACNNNNGTC 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 465
PspN4I GGNNCC 3 cut(s) 94, 184, 658
PspPI GGNCC 4 cut(s) 92, 182, 579, 657
PstI CTGCAG 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 162, 706
SatI GCNGC 2 cut(s) 342, 569
Sau3AI GATC 2 cut(s) 117, 400
Sau96I GGNCC 4 cut(s) 92, 182, 579, 657
ScrFI CCNGG 2 cut(s) 27, 207
SduI GDGCHC 1 cut(s) 465
SetI ASST 9 cut(s) 48, 158, 162, 279, 308, 356, 465, 523, 573
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 309
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 2 cut(s) 182, 579
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 54, 464
SmoI CTYRAG 2 cut(s) 54, 464
Sse9I AATT 5 cut(s) 281, 293, 327, 420, 470
SsiI CCGC 2 cut(s) 258, 341
SspMI CTAG 1 cut(s) 632
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 25, 205
TaaI ACNGT 3 cut(s) 182, 227, 450
TaqI TCGA 4 cut(s) 141, 331, 418, 440
TasI AATT 5 cut(s) 281, 293, 327, 420, 470
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 392, 689
Tru1I TTAA 2 cut(s) 162, 706
Tru9I TTAA 2 cut(s) 162, 706
TscAI CASTG 2 cut(s) 230, 253
TseFI GTSAC 3 cut(s) 30, 151, 444
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 3 cut(s) 30, 151, 444
TspDTI ATGAA 4 cut(s) 35, 539, 639, 655
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 230, 253
VpaK11BI GGWCC 2 cut(s) 182, 579
XapI RAATTY 2 cut(s) 293, 327
XceI RCATGY 2 cut(s) 79, 242
XmnI GAANNNNTTC 3 cut(s) 201, 612, 675
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.