Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35251254 .. 35251748

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTCCAAGTCAAGCAAAGCTGGGCTTCAATTTCCGGTGGGTAGGATAGCCCGGTTTCTTAAGTCTGGCAAGTACGCCGAGCATGTCGACGCCGGAGCTCCAGTGTATCTTTCGGCTGTCCTTGAATACCTAGCTACCGAGCTAAAGACTGGAAATTTGATTTTGGGTTTAAGTTGTTTTGGAGCTTGCCGGCAACGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

67

Amino Acids

7.18

Weight (kDa)

9.62

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	29, 125
AluBI	AGCT	6 cut(s)	20, 98, 134, 142, 185, 201
AluI	AGCT	6 cut(s)	20, 98, 134, 142, 185, 201
Alw21I	GWGCWC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AsuC2I	CCSGG	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	131, 202
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	101, 154
BseNI	ACTGG	2 cut(s)	101, 154
BseYI	CCCAGC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	35, 52, 93, 190
Bsp1286I	GDGCHC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	101, 154
BssAI	RCCGGY	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	187, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	187, 191
Cfr10I	RCCGGY	1 cut(s)	189
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	9 cut(s)	20, 25, 50, 98, 116, 134, 142, 185, 201
CviKI_1	RGCY	9 cut(s)	20, 25, 50, 98, 116, 134, 142, 185, 201
CviQI	GTAC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	1 cut(s)	86
FaiI	YATR	1 cut(s)	84
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	131, 202
GluI	GCNGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	4 cut(s)	35, 52, 93, 190
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HpaII	CCGG	4 cut(s)	35, 52, 93, 190
Hpy166II	GTNNAC	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	95, 103, 182
LpnPI	CCDG	7 cut(s)	6, 48, 51, 65, 106, 114, 135
MaeI	CTAG	2 cut(s)	131, 202
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	29, 154
MroNI	GCCGGC	1 cut(s)	189
MseI	TTAA	2 cut(s)	60, 170
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	4 cut(s)	35, 52, 93, 190
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	195
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	100
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	60, 170
SatI	GCNGC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	7 cut(s)	22, 100, 132, 136, 144, 187, 203
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	29, 154
SspMI	CTAG	2 cut(s)	131, 202
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	50
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	29, 154
Tru1I	TTAA	2 cut(s)	60, 170
Tru9I	TTAA	2 cut(s)	60, 170
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	198
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	131, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.