RchiOBHm_Chr4g0411441

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
35318986 .. 35319372
387 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGAACAAAAACCACAATCTGGAGTCGACGGAGTGTGCATCAACAATCATTGAAATTCAAATAACTCGACTGCAGCAAGTAAAGGAGAACTGGAGACTACAGGCGGCGAATTTGGCAACTGTGCCAAAAAGAGGAACCAAACGTAGTAGCAGCACTCTTCCTACTGCGTTTGAACCCCGACAGCAGCTCAATAAAGTTCATCGGAAAGCTGTAGCTGTTCCTCAGCCTTCTGCATTGCAAATTTACACCCCGATCTCTCTGCAGTCAGATCTTTCATCTGTGCTGTTACATAAGGGGCAGTCTGGCGGCGCTCAGAACACTGGTATATACTACCCTCACTCTGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

116

Amino Acids

12.78

Weight (kDa)

10.01

Isoelectric Point (pI)

73.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 26
AciI CCGC 2 cut(s) 104, 306
AcsI RAATTY 3 cut(s) 54, 109, 240
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 3 cut(s) 19, 131, 341
AgsI TTSAA 3 cut(s) 53, 59, 173
AluBI AGCT 3 cut(s) 187, 209, 215
AluI AGCT 3 cut(s) 187, 209, 215
Alw26I GTCTC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 73, 150, 184
ApoI RAATTY 3 cut(s) 54, 109, 240
AspLEI GCGC 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 85, 162, 196
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcoDI GTCTC 1 cut(s) 88
BfmI CTRYAG 4 cut(s) 71, 98, 210, 260
BfoI RGCGCY 1 cut(s) 312
BglII AGATCT 1 cut(s) 268
BisI GCNGC 5 cut(s) 74, 105, 151, 185, 307
BlsI GCNGC 5 cut(s) 75, 106, 152, 186, 308
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 47
BpmI CTGGAG 2 cut(s) 41, 112
Bpu10I CCTNAGC 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 131, 341
Bse1I ACTGG 2 cut(s) 95, 325
Bse3DI GCAATG 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 19, 131, 341
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 236, 326
BseNI ACTGG 2 cut(s) 95, 325
BseXI GCAGC 3 cut(s) 85, 162, 196
BslI CCNNNNNNNGG 3 cut(s) 19, 131, 341
BsmAI GTCTC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 252, 268
BspACI CCGC 2 cut(s) 104, 306
BspCNI CTCAG 2 cut(s) 235, 325
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 2 cut(s) 75, 264
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 2 cut(s) 95, 325
BssMI GATC 2 cut(s) 252, 268
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 222, 312
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 2 cut(s) 255, 271
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 252, 268
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 4 cut(s) 71, 98, 210, 260
BstV1I GCAGC 3 cut(s) 85, 162, 196
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 345
CviJI RGCY 4 cut(s) 187, 209, 215, 226
CviKI_1 RGCY 4 cut(s) 187, 209, 215, 226
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 222, 312
DpnI GATC 2 cut(s) 254, 270
DpnII GATC 2 cut(s) 252, 268
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaiI YATR 4 cut(s) 291, 326, 328, 349
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 5 cut(s) 74, 105, 151, 185, 307
Fsp4HI GCNGC 5 cut(s) 74, 105, 151, 185, 307
GlaI GCGC 1 cut(s) 310
GluI GCNGC 5 cut(s) 74, 105, 151, 185, 307
GsuI CTGGAG 2 cut(s) 41, 112
HaeII RGCGCY 1 cut(s) 312
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 204, 268, 315
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 5 cut(s) 38, 73, 233, 238, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 222, 312
HpySE526I ACGT 1 cut(s) 142
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 252, 268
LpnPI CCDG 6 cut(s) 5, 76, 86, 288, 306, 327
Lsp1109I GCAGC 3 cut(s) 85, 162, 196
LweI GCATC 1 cut(s) 47
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 285
MalI GATC 2 cut(s) 254, 270
MboI GATC 2 cut(s) 252, 268
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 268
MluCI AATT 3 cut(s) 54, 109, 240
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 125, 231, 345
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 252, 268
NlaIV GGNNCC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 5 cut(s) 75, 106, 152, 186, 308
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 136
PstI CTGCAG 2 cut(s) 75, 264
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 25
SatI GCNGC 5 cut(s) 74, 105, 151, 185, 307
Sau3AI GATC 2 cut(s) 252, 268
SchI GAGTC 1 cut(s) 32
SetI ASST 4 cut(s) 145, 189, 211, 217
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 4 cut(s) 71, 98, 210, 260
SgeI CNNG 9 cut(s) 32, 78, 89, 103, 113, 189, 262, 315, 333
Sse9I AATT 3 cut(s) 54, 109, 240
SsiI CCGC 2 cut(s) 104, 306
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 26, 67
TasI AATT 3 cut(s) 54, 109, 240
TauI GCSGC 2 cut(s) 107, 309
TscAI CASTG 1 cut(s) 325
TseI GCWGC 3 cut(s) 73, 150, 184
TspDTI ATGAA 3 cut(s) 17, 188, 264
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 19
XapI RAATTY 3 cut(s) 54, 109, 240
XmiI GTMKAC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.