RchiOBHm_Chr4g0411501
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
35341687 .. 35341944
258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGTTTGCACTTTTGTGCCGGTCTTTTTATGTTCTTGGGGACATCTAGGTTGGCTGATAGCTGGTGAAATATTCACACTAGAGACGCCCTCAGCTGGGCAAAGCGTTACTGTATTTACCAACCTGCTGTTCACATTTGTTATGGCACATTCCTTCATTGCAATGCTTTGCCACTTAAAGTTGGGCATCTTCATTTTCTTCTCCGGCTGGGTCATAATTATGTCAATATTCGTATTATGTCAAGATTGGTGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.73

Weight (kDa)

5.73

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 79 2e-10 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 95, 96
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 62, 95
AluI AGCT 2 cut(s) 62, 95
Alw26I GTCTC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 47, 80
BfuAI ACCTGC 1 cut(s) 132
BmsI GCATC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 96
Bse118I RCCGGY 1 cut(s) 19
Bse3DI GCAATG 2 cut(s) 156, 168
BseLI CCNNNNNNNGG 2 cut(s) 95, 96
BseMI GCAATG 2 cut(s) 156, 168
BseMII CTCAG 1 cut(s) 105
BseYI CCCAGC 2 cut(s) 95, 207
BsiSI CCGG 2 cut(s) 20, 204
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 95, 96
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 156, 168
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 77
BveI ACCTGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 19
CseI GACGC 1 cut(s) 94
CspCI CAANNNNNGTGG 1 cut(s) 230
CviJI RGCY 4 cut(s) 55, 62, 95, 207
CviKI_1 RGCY 4 cut(s) 55, 62, 95, 207
DdeI CTNAG 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 5 cut(s) 31, 143, 215, 221, 238
FaqI GGGAC 1 cut(s) 54
FspBI CTAG 2 cut(s) 47, 80
GsaI CCCAGC 2 cut(s) 99, 211
HapII CCGG 2 cut(s) 20, 204
HgaI GACGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 86
HpaII CCGG 2 cut(s) 20, 204
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 9, 161
HpyF3I CTNAG 1 cut(s) 91
Hsp92I GRCGYC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 33, 48, 81, 137, 193, 217
LweI GCATC 1 cut(s) 195
MaeI CTAG 2 cut(s) 47, 80
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 2 cut(s) 181, 190
MluCI AATT 1 cut(s) 216
MnlI CCTC 1 cut(s) 100
MseI TTAA 2 cut(s) 176, 256
MslI CAYNNNNRTG 3 cut(s) 14, 161, 218
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 2 cut(s) 20, 204
OliI CACNNNNGTG 1 cut(s) 14
PspFI CCCAGC 2 cut(s) 95, 207
PvuII CAGCTG 1 cut(s) 95
RseI CAYNNNNRTG 3 cut(s) 14, 161, 218
SaqAI TTAA 2 cut(s) 176, 256
SetI ASST 4 cut(s) 52, 64, 97, 126
SfaNI GCATC 1 cut(s) 195
SmiMI CAYNNNNRTG 3 cut(s) 14, 161, 218
Sse9I AATT 1 cut(s) 216
SspI AATATT 2 cut(s) 72, 228
SspMI CTAG 2 cut(s) 47, 80
TaaI ACNGT 1 cut(s) 112
TasI AATT 1 cut(s) 216
Tru1I TTAA 2 cut(s) 176, 256
Tru9I TTAA 2 cut(s) 176, 256
TspDTI ATGAA 2 cut(s) 145, 181
XspI CTAG 2 cut(s) 47, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.