RchiOBHm_Chr4g0411511
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
35342019 .. 35342219
201 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGCAATTACGTACTATATATGCACCAGTGCTATTTAGCACTTTAGGATTTGGCAATGATGCTGCTCTGTACTCAACTGTTATAACAGAAGCCATTAATGTCATCTCCACTATTGTATCCATGTACTCGGTTGACAAAGTGGGTCGTCGGACGCTTTTACTGGAAGCCAGAGTTCAAATGTTTATGTGTCATGTGTTATAG

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

7.94

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 5 - 65 2.6e-13 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AfaI GTAC 3 cut(s) 13, 71, 125
AgsI TTSAA 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 62
AseI ATTAAT 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 1 cut(s) 49
BciVI GTATCC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmsI GCATC 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 26, 165
Bse3DI GCAATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 26, 165
BseXI GCAGC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 26, 165
Bst4CI ACNGT 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 11
BstSNI TACGTA 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 33
CseI GACGC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 12, 70, 124
CviAII CATG 2 cut(s) 121, 191
CviJI RGCY 2 cut(s) 92, 167
CviKI_1 RGCY 2 cut(s) 92, 167
CviQI GTAC 3 cut(s) 12, 70, 124
Eco105I TACGTA 1 cut(s) 11
FaeI CATG 2 cut(s) 124, 194
FaiI YATR 8 cut(s) 17, 19, 21, 83, 122, 185, 192, 199
FatI CATG 2 cut(s) 120, 190
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HgaI GACGC 1 cut(s) 160
Hin1II CATG 2 cut(s) 124, 194
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 4, 23
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 124, 194
LpnPI CCDG 3 cut(s) 39, 146, 181
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 49
MaeII ACGT 1 cut(s) 10
MluCI AATT 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 128
MseI TTAA 1 cut(s) 96
NlaIII CATG 2 cut(s) 124, 194
PkrI GCNGC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 96
PsiI TTATAA 1 cut(s) 83
RsaI GTAC 3 cut(s) 13, 71, 125
RsaNI GTAC 3 cut(s) 12, 70, 124
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 63
SetI ASST 1 cut(s) 13
SfaNI GCATC 1 cut(s) 49
SgeI CNNG 5 cut(s) 38, 133, 139, 173, 180
SnaBI TACGTA 1 cut(s) 11
Sse9I AATT 1 cut(s) 5
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 5
TatI WGTACW 2 cut(s) 69, 123
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 62
TspRI CASTG 1 cut(s) 33
VspI ATTAAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.