RchiOBHm_Chr4g0412701

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
36660758 .. 36661042
285 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTCCTTCGAATCCTTCATTGGGTTGTTTTGTAACACATTGTGGGGGGAATTCAAGCTTGGAGAGTTTGGTTTGTGGGGTACCAGTGGTTGCATTTCCCCAGTGGACAGACCAAGGCACAAATGCCAAGTTGATAGAGGAAATGTGGAAAACAGGGGTAAGGGTAGCACCGAATGCGGAGGGTGTTGTTGTGGGTGAGGAGCTCAAGAGGTGTCTGGATTTGGTCATGGGAAGTGAAGAGTTGAGAAGCAATTAG

Protein Analysis

94

Amino Acids

10.12

Weight (kDa)

4.63

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 65 1.2e-12 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 84
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 71, 103
AluBI AGCT 2 cut(s) 87, 232
AluI AGCT 2 cut(s) 87, 232
Alw21I GWGCWC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 33, 111
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 11, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 113, 130
BseDI CCNNGG 2 cut(s) 11, 142
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 113, 130
BseRI GAGGAG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 50
BsmI GAATGC 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 234
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 33, 111
BspT104I TTCGAA 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 109
BsrI ACTGG 2 cut(s) 113, 130
BssECI CCNNGG 2 cut(s) 11, 142
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 120, 137
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 256
CviJI RGCY 2 cut(s) 87, 232
CviKI_1 RGCY 2 cut(s) 87, 232
CviQI GTAC 1 cut(s) 110
DraIII CACNNNGTG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FatI CATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 234
Hin1II CATG 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 235, 245
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 45, 54
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 259
KpnI GGTACC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 126, 143, 168, 230
MaeIII GTNAC 1 cut(s) 61
MboII GAAGA 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 79, 280
MnlI CCTC 5 cut(s) 22, 160, 202, 220, 231
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 33, 111
NspV TTCGAA 1 cut(s) 38
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 33, 111
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SacI GAGCTC 1 cut(s) 234
SduI GDGCHC 1 cut(s) 234
SetI ASST 4 cut(s) 33, 89, 234, 242
SfuI TTCGAA 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 79, 280
SsiI CCGC 1 cut(s) 206
SstI GAGCTC 1 cut(s) 234
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 79, 280
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 2 cut(s) 120, 137
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 2 cut(s) 120, 137
XapI RAATTY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.