RchiOBHm_Chr4g0412971

ABC1 protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
37053202 .. 37053568
367 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGGAGAAGGTTTATTTTACGTTTCGTATGAGCTTTGAATACTTGGTACCAGAAGAGTATGTCCGGACAATGAGAGAGTCTATGTTGAATAAATGTCCAGTTTCTTCCTATGAACAAGTGTGCGAAGTCATCGAGAAAGAGCTTGGAGATAAACCGGATAATATATTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.93

Weight (kDa)

4.64

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 63
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 2 cut(s) 38, 88
AluBI AGCT 2 cut(s) 33, 142
AluI AGCT 2 cut(s) 33, 142
Aor13HI TCCGGA 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 48
BsaWI WCCGGW 2 cut(s) 63, 154
Bse1I ACTGG 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 63
BseNI ACTGG 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 64, 155
Bsp13I TCCGGA 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 2 cut(s) 33, 142
CviKI_1 RGCY 2 cut(s) 33, 142
CviQI GTAC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
FaiI YATR 5 cut(s) 29, 60, 83, 111, 164
FspEI CC 9 cut(s) 29, 49, 63, 77, 111, 121, 129, 140, 168
HapII CCGG 2 cut(s) 64, 155
HinfI GANTC 1 cut(s) 77
HpaII CCGG 2 cut(s) 64, 155
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 64, 133
HpyCH4IV ACGT 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 63
KpnI GGTACC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 63, 77, 111, 168
MaeII ACGT 1 cut(s) 20
MboII GAAGA 2 cut(s) 65, 96
MlyI GAGTC 1 cut(s) 86
MroI TCCGGA 1 cut(s) 63
MspI CCGG 2 cut(s) 64, 155
NlaIV GGNNCC 1 cut(s) 48
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SchI GAGTC 1 cut(s) 86
SetI ASST 4 cut(s) 12, 23, 35, 144
SgeI CNNG 8 cut(s) 55, 62, 76, 110, 128, 145, 155, 167
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.