RchiOBHm_Chr4g0414761

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
39321083 .. 39322125
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGTTGCAGTGACGGTACTGCAGTATCTTCTGCAACCAGTATCGATGATTATGGTCGGACATCTTGATCAGCTCTCGCTATCCAGTGTAGCAATTGCCATTTCTCTCACCAATGTCACTGGTTTCAGCCTTCTTTCTGGATTGGCAGGTGGATTGGAAACCTTATGTGGGCAAGCATTTGGAGCAGAGCAATACCAAAAACTTGGAACTTATACTTGTACTGCTATGATATCACTTCTCTTGGTTTGTCCTCCAGTATGTCTCCTATGGATATTCATGGATAAATTTTTACCTTTAGTAGGCCAGGATCCATTGATACCCCTTCAGGCACGCAAATATTCAATGTGGCTTATTCCTGCACTATTTGGTGCTTCAATTATTAAACCGTTAACTCGCTATTTCCAGTCTCAGCTAGAGTCTCATTTTCCCAATGCTCCTATCCTCTTTTGCCATTCTTATCTTCCATATATCTGCCTCAAGGGCTCTTGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

7.57

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 4 - 148 8.1e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 18, 220
AfiI CCNNNNNNNGG 2 cut(s) 168, 299
AgsI TTSAA 2 cut(s) 342, 375
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 2 cut(s) 73, 412
AluI AGCT 2 cut(s) 73, 412
Alw26I GTCTC 3 cut(s) 266, 411, 423
AlwI GGATC 2 cut(s) 302, 315
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 100
BaeI ACNNNNGTAYC 4 cut(s) 8, 8, 41, 41
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 3 cut(s) 266, 411, 423
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 480
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 299
Bse1I ACTGG 5 cut(s) 38, 84, 124, 254, 403
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 168, 299
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 5 cut(s) 38, 84, 124, 254, 403
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 168, 299
BsmAI GTCTC 3 cut(s) 266, 411, 423
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 2 cut(s) 67, 307
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 302, 315
BsrI ACTGG 5 cut(s) 38, 84, 124, 254, 403
BssMI GATC 2 cut(s) 67, 307
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 16, 387
BstC8I GCNNGC 2 cut(s) 174, 331
BstDEI CTNAG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 297
BstKTI GATC 2 cut(s) 70, 310
BstMAI GTCTC 3 cut(s) 266, 411, 423
BstMBI GATC 2 cut(s) 67, 307
BstMWI GCNNNNNNNGC 2 cut(s) 182, 480
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 15, 91, 117
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 174, 331
ClaI ATCGAT 1 cut(s) 44
Csp6I GTAC 2 cut(s) 17, 219
CviAII CATG 1 cut(s) 277
CviJI RGCY 6 cut(s) 73, 129, 303, 349, 412, 483
CviKI_1 RGCY 6 cut(s) 73, 129, 303, 349, 412, 483
CviQI GTAC 2 cut(s) 17, 219
DdeI CTNAG 1 cut(s) 408
DpnI GATC 2 cut(s) 69, 309
DpnII GATC 2 cut(s) 67, 307
Eco24I GRGCYC 1 cut(s) 485
Eco32I GATATC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 485
FaeI CATG 1 cut(s) 280
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 485
FspBI CTAG 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 1 cut(s) 280
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 1 cut(s) 416
HpaI GTTAAC 1 cut(s) 390
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 65, 138
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 140, 332
HpyCH4III ACNGT 2 cut(s) 16, 387
HpyCH4V TGCA 4 cut(s) 8, 22, 34, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 480
HpyF3I CTNAG 1 cut(s) 408
Hsp92II CATG 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 67
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 67, 307
LmnI GCTCC 2 cut(s) 182, 439
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 2 cut(s) 10, 115
MalI GATC 2 cut(s) 69, 309
MboI GATC 2 cut(s) 67, 307
MboII GAAGA 2 cut(s) 20, 452
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 3 cut(s) 93, 284, 375
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 3 cut(s) 261, 452, 485
MseI TTAA 2 cut(s) 381, 389
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 182, 480
NdeII GATC 2 cut(s) 67, 307
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 10, 115
PaqCI CACCTGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 18, 220
RsaNI GTAC 2 cut(s) 17, 219
SaqAI TTAA 2 cut(s) 381, 389
Sau3AI GATC 2 cut(s) 67, 307
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 485
SetI ASST 5 cut(s) 75, 151, 164, 295, 414
SfcI CTRYAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 3 cut(s) 93, 284, 375
SspI AATATT 1 cut(s) 338
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 16, 387
TaqI TCGA 1 cut(s) 44
TasI AATT 3 cut(s) 93, 284, 375
TatI WGTACW 1 cut(s) 218
Tru1I TTAA 2 cut(s) 381, 389
Tru9I TTAA 2 cut(s) 381, 389
TscAI CASTG 3 cut(s) 15, 91, 124
TseFI GTSAC 2 cut(s) 10, 115
Tsp45I GTSAC 2 cut(s) 10, 115
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 3 cut(s) 15, 91, 124
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 284
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.